Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06530 Sapria himalayana HOM05D003313 ORTHO05D004217 7.3e-98 360.5 179 100.0
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 2.2e-38 162.9 125 68.0
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 2.5e-37 159.5 147 61.2
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 2.5e-37 159.5 147 61.2
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 2.5e-37 159.5 147 61.9
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 3.2e-37 159.1 147 59.9
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 3.2e-37 159.1 149 61.1
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 4.2e-37 158.7 147 61.2
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 9.4e-37 157.5 150 60.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 9.4e-37 157.5 136 61.8
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 1.2e-36 157.1 150 60.0
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 2.7e-36 156.0 147 58.5
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 3.6e-36 155.6 121 66.9
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 6.1e-36 154.8 129 64.3
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 7.9e-36 154.5 149 59.1
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.0e-35 154.1 121 63.6
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 1.8e-35 153.3 147 59.9
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 2.3e-35 152.9 149 59.7
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 3.0e-35 152.5 149 57.7
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 3.9e-35 152.1 120 65.8
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 3.9e-35 152.1 121 66.9
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.7e-35 151.4 129 60.5
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.7e-35 151.4 129 60.5
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 6.7e-35 151.4 121 65.3
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 8.8e-35 151.0 121 64.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 8.8e-35 151.0 121 62.8
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.1e-34 150.6 147 57.8
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.1e-34 150.6 147 57.8
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.1e-34 150.6 147 57.8
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.1e-34 150.6 129 61.2
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.1e-34 150.6 147 58.5
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 1.5e-34 150.2 150 56.7
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 2.0e-34 149.8 129 61.2
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 2.0e-34 149.8 147 57.1
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 2.6e-34 149.4 147 58.5
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 2.6e-34 149.4 145 58.6
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.3e-34 149.1 147 55.1
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 3.3e-34 149.1 121 65.3
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 3.3e-34 149.1 121 65.3
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 4.4e-34 148.7 147 57.1
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 4.4e-34 148.7 147 57.1
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 4.4e-34 148.7 129 59.7
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 5.7e-34 148.3 129 62.0
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 7.4e-34 147.9 121 64.5
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 9.7e-34 147.5 121 62.8
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 9.7e-34 147.5 150 56.7
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 1.3e-33 147.1 147 56.5
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 1.3e-33 147.1 150 57.3
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 1.3e-33 147.1 146 56.8
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.3e-33 147.1 129 58.9
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 1.7e-33 146.7 129 60.5
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 2.2e-33 146.4 121 66.1
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 2.2e-33 146.4 121 66.1
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 2.2e-33 146.4 121 66.1
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.2e-33 146.4 129 59.7
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 4.8e-33 145.2 121 65.3
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 6.3e-33 144.8 147 54.4
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.1e-32 144.1 147 55.1
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.1e-32 144.1 129 58.9
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 1.4e-32 143.7 129 59.7
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 1.4e-32 143.7 129 59.7
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 1.4e-32 143.7 129 59.7
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 3.1e-32 142.5 129 58.9
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 3.1e-32 142.5 129 58.9
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.1e-32 142.1 121 59.5
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.1e-32 142.1 121 59.5
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 4.1e-32 142.1 147 55.8
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 5.3e-32 141.7 147 53.7
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.2e-31 140.6 129 58.1
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.2e-31 140.6 129 58.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.2e-31 140.6 129 58.1
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 1.5e-31 140.2 147 51.7
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 2.0e-31 139.8 150 56.0
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 3.5e-31 139.0 130 58.5
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 4.5e-31 138.7 130 57.7
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 4.5e-31 138.7 130 57.7
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 5.9e-31 138.3 150 53.3
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.9e-31 138.3 150 53.3
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 7.7e-31 137.9 147 53.1
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 7.7e-31 137.9 147 53.1
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.0e-30 137.5 129 57.4
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 1.7e-30 136.7 130 56.2
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 1.7e-30 136.7 130 56.9
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 1.7e-30 136.7 130 56.9
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.2e-30 136.3 121 62.8
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.2e-30 136.3 121 62.8
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.9e-30 136.0 130 56.9
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.9e-30 136.0 125 55.2
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.9e-30 136.0 125 55.2
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 2.9e-30 136.0 125 55.2
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 3.8e-30 135.6 129 58.1
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 3.8e-30 135.6 121 62.0
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.8e-30 135.6 147 52.4
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 5.0e-30 135.2 121 57.9
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 6.5e-30 134.8 125 55.2
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 6.5e-30 134.8 131 56.5
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 1.5e-29 133.7 110 63.6
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 1.9e-29 133.3 112 64.3
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.5e-29 132.9 125 54.4
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 2.5e-29 132.9 125 53.6
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.2e-29 132.1 149 51.0
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.2e-29 132.1 149 51.0
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 5.5e-29 131.7 149 51.0
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.5e-29 131.7 125 54.4
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.2e-29 131.3 125 53.6
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.2e-29 131.3 125 53.6
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 1.2e-28 130.6 148 51.4
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.6e-28 130.2 122 59.0
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 2.7e-28 129.4 149 50.3
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 8.0e-28 127.9 125 53.6
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 1.0e-27 127.5 108 63.9
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.0e-27 127.5 121 58.7
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 1.0e-27 127.5 121 57.0
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.4e-27 127.1 130 53.8
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.4e-27 127.1 130 53.8
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.0e-27 125.9 113 61.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 3.0e-27 125.9 129 52.7
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.9e-27 125.6 121 56.2
Hma1.2p1_0105F.1_g050850 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 5.2e-27 125.2 117 56.4
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 6.7e-27 124.8 149 49.0
arahy.Tifrunner.gnm1.ann1.VIS9FS Arachis hypogaea HOM05D003313 ORTHO05D004217 2.7e-20 102.8 99 58.6
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 6.1e-20 101.7 126 46.8
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 1.5e-18 97.1 109 47.7
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 5.7e-18 95.1 121 42.1
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.3e-17 94.0 80 61.2
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 8.3e-17 91.3 83 60.2
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 1.8e-16 90.1 156 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 2.5e-13 79.7 123 40.7
arahy.Tifrunner.gnm1.ann1.ZR84UM Arachis hypogaea HOM05D003313 ORTHO05D012270 5.5e-13 78.6 69 59.4
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 8.0e-12 74.7 130 36.9
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 3.4e-10 69.3 69 55.1
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 9.1e-08 61.2 61 49.2
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 7.7e-07 58.2 47 61.7
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 1.3e-06 57.4 44 63.6
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 5.0e-06 55.5 44 63.6
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 6.6e-06 55.1 40 65.0
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 8.6e-06 54.7 40 65.0


User provided reference genes

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