Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 4.1e-110 401.4 186 100.0
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 3.7e-66 255.4 196 67.3
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 6.1e-37 158.3 112 65.2
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 2.0e-35 153.3 117 62.4
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 3.3e-35 152.5 112 64.3
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 3.3e-35 152.5 112 64.3
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 1.3e-34 150.6 112 61.6
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.7e-34 150.2 111 62.2
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 2.8e-34 149.4 130 57.7
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 4.8e-34 148.7 117 59.0
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 8.2e-34 147.9 112 60.7
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 1.8e-33 146.7 112 61.6
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.4e-33 146.4 122 57.4
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 2.4e-33 146.4 135 52.6
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 2.4e-33 146.4 112 61.6
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 3.1e-33 146.0 113 58.4
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 4.1e-33 145.6 121 56.2
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 5.3e-33 145.2 127 55.9
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 5.3e-33 145.2 118 55.9
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 9.1e-33 144.4 116 57.8
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 9.1e-33 144.4 120 57.5
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 1.2e-32 144.1 121 57.0
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.2e-32 144.1 116 57.8
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.6e-32 142.9 120 59.2
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 2.6e-32 142.9 120 59.2
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 2.6e-32 142.9 116 59.5
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 3.5e-32 142.5 118 56.8
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 4.5e-32 142.1 112 60.7
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 4.5e-32 142.1 137 51.1
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 7.7e-32 141.4 120 58.3
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 7.7e-32 141.4 118 57.6
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.0e-31 141.0 133 54.1
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.0e-31 141.0 112 59.8
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 1.0e-31 141.0 116 59.5
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.0e-31 141.0 112 59.8
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.3e-31 140.6 118 55.1
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 1.7e-31 140.2 113 59.3
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.7e-31 140.2 112 59.8
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 2.2e-31 139.8 106 63.2
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 2.2e-31 139.8 135 50.4
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 2.9e-31 139.4 114 58.8
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 3.8e-31 139.0 112 55.4
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 3.8e-31 139.0 110 60.0
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 5.0e-31 138.7 112 55.4
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 5.0e-31 138.7 113 55.8
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 5.0e-31 138.7 112 58.0
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 6.5e-31 138.3 118 55.9
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 8.5e-31 137.9 120 55.0
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 8.5e-31 137.9 132 53.0
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 8.5e-31 137.9 120 55.8
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 1.1e-30 137.5 114 57.0
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.9e-30 136.7 108 59.3
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.9e-30 136.7 112 56.2
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.9e-30 136.7 106 58.5
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 7.2e-30 134.8 111 55.0
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 9.4e-30 134.4 122 54.1
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 9.4e-30 134.4 112 56.2
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 9.4e-30 134.4 113 54.9
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 9.4e-30 134.4 117 54.7
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.2e-29 134.0 118 55.9
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.2e-29 134.0 118 55.9
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.2e-29 134.0 122 53.3
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.2e-29 134.0 112 55.4
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 1.6e-29 133.7 112 57.1
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 2.1e-29 133.3 123 53.7
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 2.1e-29 133.3 117 55.6
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 2.1e-29 133.3 111 54.1
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 2.1e-29 133.3 118 53.4
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 6.1e-29 131.7 127 52.8
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 3.0e-28 129.4 131 51.1
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 4.0e-28 129.0 127 52.0
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.1e-27 127.5 112 56.2
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.5e-27 127.1 118 50.0
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.5e-27 127.1 118 50.0
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.0e-27 126.7 118 50.0
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.0e-27 126.7 118 50.0
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 2.0e-27 126.7 122 48.4
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.0e-27 126.7 124 49.2
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 2.6e-27 126.3 116 49.1
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 8.2e-26 121.3 123 49.6
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.1e-25 120.9 106 54.7
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 1.1e-25 120.9 122 48.4
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.8e-25 120.2 106 53.8
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 1.8e-25 120.2 106 52.8
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 4.1e-25 119.0 109 53.2
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 7.0e-25 118.2 109 53.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 9.1e-25 117.9 117 48.7
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 9.1e-25 117.9 117 48.7
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 9.1e-25 117.9 117 48.7
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 9.1e-25 117.9 117 48.7
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 9.1e-25 117.9 117 48.7
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 1.2e-24 117.5 106 50.9
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 2.0e-24 116.7 106 50.9
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 2.7e-24 116.3 117 48.7
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 2.9e-23 112.8 113 47.8
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 2.9e-23 112.8 113 46.0
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 3.8e-23 112.5 106 49.1
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 2.0e-19 100.1 116 40.5
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 1.7e-18 97.1 96 47.9
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 8.3e-18 94.7 102 41.2
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.0e-17 91.7 118 43.2
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.7e-16 89.7 59 67.8
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 4.5e-16 89.0 67 64.2
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.1e-14 84.3 66 59.1
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.6e-13 79.3 59 62.7
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 8.0e-13 78.2 59 62.7
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 5.2e-12 75.5 59 57.6
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.7e-11 72.0 71 47.9
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 5.4e-09 65.5 63 50.8
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 4.5e-08 62.4 98 34.7
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.6e-06 55.5 103 30.1


User provided reference genes

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