Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 1.2e-143 513.1 254 100.0
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 4.3e-35 152.5 140 58.6
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 8.1e-34 148.3 132 59.8
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 1.5e-32 144.1 139 54.7
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 1.7e-31 140.6 137 54.7
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 3.2e-30 136.3 135 50.4
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 2.1e-29 133.7 145 51.7
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 2.7e-29 133.3 135 48.9
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 4.6e-29 132.5 140 50.0
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 1.3e-28 131.0 141 48.9
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 3.0e-28 129.8 135 51.1
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 3.9e-28 129.4 135 47.4
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 3.9e-28 129.4 135 47.4
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 5.1e-28 129.0 135 49.6
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 7.3e-27 125.2 134 47.0
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 2.1e-26 123.6 135 49.6
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 2.8e-26 123.2 136 51.5
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 4.7e-26 122.5 136 49.3
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 3.1e-25 119.8 151 45.0
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 4.0e-25 119.4 138 47.1
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 5.2e-25 119.0 135 48.9
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 7.6e-24 115.2 139 46.0
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 9.9e-24 114.8 137 45.3
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 9.9e-24 114.8 130 50.0
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 1.1e-22 111.3 135 43.7
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 1.1e-22 111.3 141 44.0
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 2.4e-22 110.2 151 41.1
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 4.2e-22 109.4 138 45.7
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 1.6e-21 107.5 136 44.1
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 2.7e-21 106.7 124 49.2
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 3.5e-21 106.3 139 41.7
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 4.6e-21 105.9 139 41.7
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 7.8e-21 105.1 135 44.4
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 1.3e-20 104.4 141 41.1
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 1.3e-20 104.4 139 40.3
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 2.3e-20 103.6 122 45.9
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 3.9e-20 102.8 162 41.4
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 3.9e-20 102.8 127 44.9
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 6.6e-20 102.1 137 41.6
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 1.5e-19 100.9 139 41.7
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 1.9e-19 100.5 142 41.5
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 2.5e-19 100.1 148 39.9
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 2.5e-19 100.1 135 40.7
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 2.5e-19 100.1 136 39.7
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 3.3e-19 99.8 149 38.9
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 4.3e-19 99.4 138 39.9
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 9.6e-19 98.2 132 43.2
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 1.3e-18 97.8 136 39.7
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 1.6e-18 97.4 137 38.7
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 1.6e-18 97.4 136 39.0
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 2.1e-18 97.1 131 44.3
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 2.1e-18 97.1 131 44.3
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 3.6e-18 96.3 139 41.0
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 4.8e-18 95.9 131 44.3
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 4.8e-18 95.9 142 39.4
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 4.8e-18 95.9 135 40.7
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 6.2e-18 95.5 113 44.2
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 8.1e-18 95.1 139 39.6
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.4e-17 94.4 138 39.1
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 2.4e-17 93.6 137 43.1
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 2.0e-16 90.5 148 39.2
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 3.4e-16 89.7 149 39.6
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 5.8e-16 89.0 151 37.7
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 5.8e-16 89.0 139 39.6
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 1.3e-15 87.8 132 37.9
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 1.7e-15 87.4 135 39.3
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 2.2e-15 87.0 124 38.7
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 2.9e-15 86.7 148 38.5
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 4.9e-15 85.9 154 36.4
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 1.1e-14 84.7 151 39.1
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 1.4e-14 84.3 122 45.9
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 1.4e-14 84.3 154 34.4
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 3.5e-13 79.7 153 36.6
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.3e-12 77.8 138 37.0
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 1.3e-12 77.8 137 38.0
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 1.8e-12 77.4 153 36.6
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 3.0e-12 76.6 141 35.5
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 3.0e-12 76.6 141 35.5
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 3.0e-12 76.6 147 39.5
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 6.7e-12 75.5 135 33.3
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 8.7e-12 75.1 124 37.9
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.1e-11 74.7 126 37.3
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 1.5e-11 74.3 137 40.1
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 3.3e-11 73.2 125 32.8
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 3.3e-11 73.2 115 40.9
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 1.6e-10 70.9 142 35.9
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 2.8e-10 70.1 90 42.2
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 2.8e-10 70.1 131 36.6
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.6e-10 69.7 124 37.1
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 4.8e-10 69.3 133 33.1
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 1.1e-09 68.2 126 34.1
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 2.4e-09 67.0 132 31.8
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 9.0e-09 65.1 149 29.5
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 3.4e-08 63.2 170 29.4
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 2.9e-07 60.1 125 35.2
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 1.9e-06 57.4 137 30.7
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 3.2e-06 56.6 129 34.9
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 9.3e-06 55.1 188 26.6


User provided reference genes

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