Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 1.4e-244 849.4 478 100.0
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 8.9e-18 95.9 110 43.6
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.4e-15 88.6 98 46.9
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 7.1e-15 86.3 169 34.9
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 2.1e-14 84.7 134 41.0
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 3.9e-13 80.5 174 32.8
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 6.6e-13 79.7 85 49.4
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 8.7e-13 79.3 98 43.9
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 8.7e-13 79.3 68 51.5
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 1.1e-12 79.0 173 32.4
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 1.1e-12 79.0 133 38.3
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 1.9e-12 78.2 117 36.8
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 1.9e-12 78.2 73 47.9
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 2.5e-12 77.8 172 33.1
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 2.5e-12 77.8 175 36.6
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 3.3e-12 77.4 80 43.8
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 4.3e-12 77.0 97 38.1
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 7.3e-12 76.3 145 37.2
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 1.3e-11 75.5 101 37.6
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.3e-11 75.5 66 51.5
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 1.3e-11 75.5 82 43.9
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.1e-11 74.7 98 38.8
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 2.1e-11 74.7 80 42.5
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 2.8e-11 74.3 119 35.3
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 2.8e-11 74.3 144 37.5
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 2.8e-11 74.3 65 50.8
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 3.6e-11 73.9 145 33.1
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 3.6e-11 73.9 145 33.1
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 3.6e-11 73.9 65 52.3
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 3.6e-11 73.9 65 52.3
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 4.8e-11 73.6 107 43.0
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 6.2e-11 73.2 104 41.3
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 6.2e-11 73.2 161 34.2
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 8.1e-11 72.8 102 41.2
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 8.1e-11 72.8 65 49.2
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 8.1e-11 72.8 65 50.8
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 8.1e-11 72.8 65 50.8
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.1e-10 72.4 82 40.2
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 1.4e-10 72.0 65 53.8
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.8e-10 71.6 163 33.1
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 1.8e-10 71.6 81 44.4
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 2.4e-10 71.2 136 36.8
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 2.4e-10 71.2 89 43.8
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 3.1e-10 70.9 161 30.4
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 3.1e-10 70.9 161 30.4
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 4.0e-10 70.5 84 42.9
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 5.3e-10 70.1 164 31.7
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 6.9e-10 69.7 78 43.6
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 9.0e-10 69.3 105 35.2
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 9.0e-10 69.3 71 43.7
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 1.2e-09 68.9 160 35.0
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 2.6e-09 67.8 63 49.2
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 3.4e-09 67.4 63 50.8
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 3.4e-09 67.4 66 48.5
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.4e-09 67.4 171 31.6
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 4.5e-09 67.0 64 51.6
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 4.5e-09 67.0 59 47.5
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 5.8e-09 66.6 64 45.3
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 5.8e-09 66.6 68 47.1
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 7.6e-09 66.2 181 31.5
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 7.6e-09 66.2 62 48.4
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 7.6e-09 66.2 70 41.4
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 9.9e-09 65.9 64 46.9
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 1.7e-08 65.1 71 39.4
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 2.2e-08 64.7 92 41.3
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.2e-08 64.7 200 30.0
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 2.9e-08 64.3 101 34.7
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 2.9e-08 64.3 193 29.5
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 3.8e-08 63.9 65 44.6
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 3.8e-08 63.9 113 32.7
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 6.4e-08 63.2 72 41.7
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 6.4e-08 63.2 91 39.6
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 6.4e-08 63.2 64 43.8
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 6.4e-08 63.2 73 42.5
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 1.1e-07 62.4 182 30.8
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.4e-07 62.0 62 43.5
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 1.4e-07 62.0 124 33.9
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 1.4e-07 62.0 64 42.2
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.4e-07 62.0 70 41.4
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 1.9e-07 61.6 71 38.0
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 1.9e-07 61.6 69 40.6
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.9e-07 61.6 70 42.9
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 1.9e-07 61.6 70 41.4
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 2.4e-07 61.2 70 44.3
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 2.4e-07 61.2 65 44.6
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 2.4e-07 61.2 69 39.1
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 3.2e-07 60.8 59 50.8
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 4.2e-07 60.5 184 28.3
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 5.4e-07 60.1 174 28.7
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.7e-06 57.8 185 25.9
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 2.7e-06 57.8 105 31.4
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 4.6e-06 57.0 163 28.2
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 4.6e-06 57.0 75 33.3


User provided reference genes

Program Settings