Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 2.8e-167 592.0 338 100.0
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 4.6e-85 318.9 245 75.1
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.5e-77 292.7 209 77.5
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 9.3e-70 268.1 296 56.8
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 2.1e-66 256.9 302 53.3
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.1e-65 254.6 265 59.2
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.6e-64 250.0 258 58.1
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.3e-63 247.7 276 55.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.7e-63 247.3 258 59.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.4e-62 244.2 244 60.2
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.5e-62 243.4 309 50.5
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.6e-61 240.7 296 52.0
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 7.9e-61 238.4 282 54.3
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.3e-60 236.9 334 48.8
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.3e-60 236.9 294 53.4
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 6.7e-60 235.3 255 57.3
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.5e-59 234.2 258 57.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-59 233.8 289 53.6
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-59 233.8 289 53.6
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.3e-59 233.0 294 52.0
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.3e-59 233.0 304 51.0
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 3.3e-59 233.0 320 48.8
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 7.4e-59 231.9 301 52.8
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 9.7e-59 231.5 284 52.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 2.1e-58 230.3 311 49.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.8e-58 229.9 294 51.4
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 6.3e-58 228.8 299 50.8
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.4e-57 227.6 272 54.4
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.8e-57 227.3 262 54.2
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 4.1e-57 226.1 267 54.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 6.9e-57 225.3 255 54.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.2e-56 224.6 290 52.4
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.5e-56 224.2 301 50.2
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-56 224.2 154 79.9
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 4.5e-56 222.6 251 54.2
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 5.9e-56 222.2 265 55.1
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.0e-55 221.5 251 55.0
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.3e-55 221.1 262 52.7
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 2.9e-55 219.9 256 54.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.1e-54 218.0 258 53.5
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 2.5e-54 216.9 294 48.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.5e-54 216.9 304 48.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 2.5e-54 216.9 317 47.0
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 3.2e-54 216.5 250 54.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.2e-54 216.5 261 53.6
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 4.2e-54 216.1 260 51.5
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 4.2e-54 216.1 250 54.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 5.5e-54 215.7 271 52.0
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 9.3e-54 214.9 260 53.8
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 9.3e-54 214.9 260 51.9
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.6e-53 214.2 288 47.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.6e-53 214.2 302 48.0
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.1e-53 213.8 295 50.5
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.1e-53 213.8 297 51.2
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 2.7e-53 213.4 251 51.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 3.6e-53 213.0 283 50.5
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 3.6e-53 213.0 310 44.2
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 3.6e-53 213.0 254 51.2
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 4.6e-53 212.6 259 52.1
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 6.1e-53 212.2 296 49.3
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 6.1e-53 212.2 199 59.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 7.9e-53 211.8 258 52.3
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.0e-52 211.5 261 53.3
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.3e-52 210.3 304 47.4
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 2.3e-52 210.3 254 50.4
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 5.1e-52 209.1 266 50.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 6.7e-52 208.8 283 48.8
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.9e-51 207.2 251 51.8
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 1.9e-51 207.2 283 48.8
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.9e-51 207.2 196 59.7
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.4e-51 205.3 264 49.6
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.7e-50 204.1 310 44.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 2.8e-50 203.4 260 51.5
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 6.3e-50 202.2 244 51.6
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 6.3e-50 202.2 180 62.2
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.1e-49 201.4 279 49.1
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.4e-49 201.1 226 55.3
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.8e-49 200.7 180 63.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.4e-49 200.3 282 48.9
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.1e-49 199.5 257 50.2
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.3e-49 199.1 290 47.2
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 9.1e-49 198.4 260 50.0
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.5e-48 197.6 267 48.7
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.5e-48 197.6 277 48.7
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-48 197.2 305 46.6
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-48 197.2 277 48.7
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.4e-48 196.4 279 49.1
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.4e-48 196.4 277 48.7
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.4e-48 196.4 208 58.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 7.7e-48 195.3 299 47.5
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 2.2e-47 193.7 173 62.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 2.9e-47 193.4 260 48.8
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 3.8e-47 193.0 243 51.9
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 5.0e-47 192.6 306 45.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.1e-46 191.4 201 55.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.4e-46 191.0 300 45.7
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.5e-46 190.3 270 47.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.2e-46 189.9 168 64.3
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.2e-46 189.9 265 48.3
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 7.2e-46 188.7 262 48.5
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.6e-45 187.6 160 67.5
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 3.6e-45 186.4 257 48.2
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 3.6e-45 186.4 226 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 6.1e-45 185.7 253 47.8
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 6.1e-45 185.7 255 48.2
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 7.9e-45 185.3 258 48.4
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 7.9e-45 185.3 288 46.2
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-44 184.9 283 44.5
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-44 184.9 283 44.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 2.0e-43 180.6 233 49.8
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 3.3e-43 179.9 253 47.8
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 4.4e-43 179.5 302 43.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.8e-42 176.8 164 57.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.8e-42 176.8 288 43.8
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.2e-40 171.4 196 50.0
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.1e-37 160.6 167 55.1
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.4e-36 157.9 206 50.0
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.8e-36 157.5 262 43.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 4.1e-33 146.4 170 47.6
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 8.0e-29 132.1 197 44.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.6e-24 117.9 178 50.6
SHI29822 Sapria himalayana HOM05D005166 ORTHO05D006120 3.2e-22 110.2 64 93.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 6.3e-18 95.9 88 62.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.9e-14 84.3 189 34.4
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.9e-14 84.3 132 37.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 5.5e-14 82.8 61 68.9
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.2e-13 81.6 113 48.7
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.4e-09 68.2 39 82.1


User provided reference genes

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