Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.7e-85 318.2 159 100.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.7e-24 115.2 137 46.7
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.7e-24 115.2 134 47.0
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.8e-23 113.2 134 46.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.4e-23 112.8 134 47.0
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.2e-23 111.7 134 47.0
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.6e-22 109.4 134 44.0
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.3e-21 107.1 126 49.2
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 6.4e-21 104.8 127 45.7
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 6.4e-21 104.8 137 44.5
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 8.4e-21 104.4 116 47.4
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 8.4e-21 104.4 138 44.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-20 104.0 141 43.3
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.1e-20 104.0 121 50.4
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.4e-20 103.6 120 49.2
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.4e-20 103.6 139 43.2
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-20 103.6 137 41.6
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-20 103.6 138 42.8
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.4e-20 103.6 127 47.2
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.4e-20 103.6 127 47.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.9e-20 103.2 139 42.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-20 103.2 139 42.4
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.9e-20 103.2 139 43.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.9e-20 103.2 118 51.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.4e-20 102.8 141 41.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.4e-20 102.8 137 41.6
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.4e-20 102.8 120 45.8
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.4e-20 102.8 118 49.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.4e-20 102.8 124 46.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.2e-20 102.4 140 40.7
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 4.2e-20 102.1 142 40.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.2e-20 102.1 135 45.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.4e-20 101.7 120 49.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 5.4e-20 101.7 137 41.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.1e-20 101.3 141 40.4
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 7.1e-20 101.3 139 43.2
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 7.1e-20 101.3 126 45.2
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 9.3e-20 100.9 135 44.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 9.3e-20 100.9 118 50.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.3e-20 100.9 127 43.3
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.2e-19 100.5 139 40.3
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-19 100.1 121 47.9
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.5e-19 99.0 127 44.1
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.5e-19 99.0 138 43.5
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.6e-19 98.6 140 38.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 4.6e-19 98.6 94 53.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 4.6e-19 98.6 127 46.5
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.8e-19 97.8 129 45.0
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 7.8e-19 97.8 138 39.9
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 7.8e-19 97.8 127 45.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 7.8e-19 97.8 127 43.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.0e-18 97.4 123 42.3
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.0e-18 97.4 129 45.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.3e-18 97.1 86 55.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.3e-18 97.1 107 45.8
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.3e-18 97.1 107 45.8
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.3e-18 97.1 129 42.6
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.3e-18 96.3 86 55.8
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.3e-18 96.3 136 44.1
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.0e-18 95.9 92 57.6
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 3.9e-18 95.5 89 52.8
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 6.6e-18 94.7 125 44.8
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 8.7e-18 94.4 114 45.6
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 8.7e-18 94.4 97 46.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 8.7e-18 94.4 125 44.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-17 93.6 83 56.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-17 93.6 83 56.6
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.9e-17 93.2 114 43.0
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.9e-17 93.2 126 42.9
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.9e-17 93.2 82 56.1
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 2.5e-17 92.8 83 55.4
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.3e-17 92.4 144 43.8
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.3e-17 92.4 144 43.8
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.3e-17 92.4 124 43.5
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.3e-17 92.4 120 45.0
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.3e-17 92.0 122 44.3
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.6e-17 91.7 83 54.2
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 5.6e-17 91.7 138 42.8
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.6e-17 91.7 138 41.3
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 7.3e-17 91.3 121 43.8
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 7.3e-17 91.3 137 41.6
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 7.3e-17 91.3 83 55.4
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.6e-17 90.9 149 38.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-16 90.1 83 59.0
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-16 90.1 120 43.3
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.1e-16 89.7 83 51.8
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.1e-16 89.7 121 42.1
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.1e-16 89.7 136 40.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.8e-16 89.4 82 52.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.8e-16 89.4 126 39.7
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.6e-16 89.0 141 39.0
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.6e-16 89.0 129 42.6
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 3.6e-16 89.0 82 53.7
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 4.8e-16 88.6 82 51.2
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.8e-16 88.6 127 42.5
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.8e-16 88.6 82 52.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 6.2e-16 88.2 118 45.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.1e-16 87.8 136 39.7
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 8.1e-16 87.8 82 52.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.1e-15 87.4 82 51.2
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.1e-15 87.4 118 44.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.4e-15 87.0 82 50.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.8e-15 86.7 85 48.2
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-15 86.7 128 41.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-15 86.7 128 41.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-15 86.7 128 41.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 3.1e-15 85.9 81 51.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 3.1e-15 85.9 85 49.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.1e-15 85.9 139 38.8
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.1e-15 85.9 134 40.3
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 3.1e-15 85.9 117 44.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 4.0e-15 85.5 128 39.8
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.0e-15 85.5 140 40.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.3e-15 85.1 134 41.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 5.3e-15 85.1 82 50.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 5.3e-15 85.1 128 40.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 6.9e-15 84.7 136 40.4
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.0e-15 84.3 82 51.2
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.2e-14 84.0 82 48.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.2e-14 84.0 126 39.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.2e-14 84.0 84 47.6
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.2e-14 84.0 115 38.3
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.6e-14 82.8 87 47.1
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.4e-14 82.4 82 48.8
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.2e-13 79.7 118 40.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 4.9e-13 78.6 88 44.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 4.9e-13 78.6 113 38.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 3.0e-10 69.3 38 76.3
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 6.6e-10 68.2 75 50.7
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.4e-07 59.7 53 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.1e-07 59.3 94 38.3
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 3.1e-07 59.3 43 58.1
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.6e-06 56.2 84 38.1
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 5.8e-06 55.1 109 31.2


User provided reference genes

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