Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 6.6e-140 500.7 249 100.0
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.2e-111 406.0 233 89.7
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.8e-87 325.5 233 70.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 8.7e-68 261.2 234 62.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.1e-67 260.8 230 61.7
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.5e-67 259.6 230 61.3
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.4e-67 258.1 230 60.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.7e-66 256.9 238 59.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 3.7e-66 255.8 250 56.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.7e-66 255.8 230 60.4
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.8e-66 255.4 217 60.4
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 6.3e-66 255.0 242 56.2
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 8.2e-66 254.6 233 57.5
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 8.2e-66 254.6 233 58.4
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.1e-65 254.2 242 56.6
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-65 253.8 242 56.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.4e-65 253.1 220 60.9
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.1e-65 252.7 233 57.9
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.3e-65 251.9 234 58.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 5.3e-65 251.9 234 56.8
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 5.3e-65 251.9 234 56.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 9.1e-65 251.1 179 70.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.1e-65 251.1 191 66.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.5e-64 250.4 214 59.8
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-64 250.4 176 71.0
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-64 250.4 235 57.4
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.0e-64 250.0 207 62.3
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.9e-64 248.4 176 70.5
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.9e-64 248.4 179 69.8
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 7.7e-64 248.1 185 69.7
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 7.7e-64 248.1 187 66.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.0e-63 247.7 163 76.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-63 247.7 220 59.5
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.0e-63 247.7 191 67.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.3e-63 247.3 228 59.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 2.2e-63 246.5 199 64.3
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 2.2e-63 246.5 199 64.3
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.9e-63 246.1 214 58.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.9e-63 246.1 214 58.9
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 2.9e-63 246.1 213 61.5
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.9e-63 246.1 165 73.9
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.9e-63 246.1 198 65.2
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.8e-63 245.7 199 63.8
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.8e-63 245.7 199 63.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 3.8e-63 245.7 199 63.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.8e-63 245.7 211 58.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.8e-63 245.7 220 60.9
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 5.0e-63 245.4 177 69.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.5e-63 245.0 188 66.5
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 6.5e-63 245.0 180 68.9
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 6.5e-63 245.0 211 61.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 8.5e-63 244.6 168 72.0
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 8.5e-63 244.6 187 66.8
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 8.5e-63 244.6 176 69.3
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-62 244.2 214 58.4
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-62 244.2 199 63.8
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.1e-62 244.2 163 73.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.1e-62 244.2 246 56.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.1e-62 244.2 211 59.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.4e-62 243.8 180 68.3
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 2.5e-62 243.0 222 59.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 4.2e-62 242.3 190 65.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.2e-62 242.3 179 68.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 4.2e-62 242.3 163 73.6
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 7.2e-62 241.5 212 59.4
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 7.2e-62 241.5 184 68.5
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 7.2e-62 241.5 235 56.2
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 9.4e-62 241.1 215 58.1
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 9.4e-62 241.1 223 58.3
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 9.4e-62 241.1 179 69.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 9.4e-62 241.1 164 70.7
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-61 240.7 228 57.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.2e-61 240.7 189 65.6
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.6e-61 240.4 189 65.1
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.7e-61 239.6 236 54.7
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.7e-61 239.6 211 57.8
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.7e-61 239.6 197 64.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 3.6e-61 239.2 185 64.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.6e-61 238.8 168 71.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 4.6e-61 238.8 166 72.3
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 4.6e-61 238.8 174 69.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 7.9e-61 238.0 185 63.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.4e-60 237.3 156 75.6
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.4e-60 237.3 161 71.4
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.8e-60 236.9 192 62.5
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.8e-60 236.9 172 69.2
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.3e-60 236.5 233 54.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.3e-60 236.5 162 72.2
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.3e-60 236.5 192 62.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.0e-60 236.1 170 70.0
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.9e-60 235.7 191 64.4
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 3.9e-60 235.7 159 73.6
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 3.9e-60 235.7 176 66.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.1e-60 235.3 167 69.5
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 5.1e-60 235.3 188 63.8
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 5.1e-60 235.3 160 72.5
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 8.8e-60 234.6 161 72.0
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.5e-59 233.8 185 65.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-59 233.4 178 66.9
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 7.4e-59 231.5 194 63.9
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 9.7e-59 231.1 161 69.6
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 9.7e-59 231.1 176 65.3
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 9.7e-59 231.1 180 65.6
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.2e-58 229.9 163 70.6
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 1.4e-57 227.3 163 68.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.8e-57 226.9 178 63.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 3.1e-57 226.1 161 70.2
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.2e-56 224.2 157 69.4
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.4e-56 222.6 155 70.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 4.5e-56 222.2 208 56.7
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 5.0e-55 218.8 198 56.1
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.5e-54 215.3 215 57.2
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.1e-53 211.8 284 44.7
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.0e-52 209.5 151 69.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.3e-50 204.1 154 64.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.3e-50 201.8 139 70.5
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 4.5e-48 195.7 184 56.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.9e-47 193.0 231 51.9
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.0e-47 192.2 125 74.4
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.0e-47 192.2 149 61.7
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 5.5e-46 188.7 153 60.8
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.1e-45 186.8 149 61.1
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.0e-45 184.9 147 65.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.3e-44 183.3 188 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 5.2e-44 182.2 146 58.9
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.3e-42 177.6 251 45.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.4e-41 173.3 118 70.3
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 3.1e-41 172.9 123 69.9
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.1e-41 171.4 150 57.3
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.2e-39 166.8 149 60.4
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 5.5e-38 162.2 168 54.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.3e-34 151.0 142 52.8
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.6e-32 144.1 145 53.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.9e-30 137.1 124 55.6
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.8e-25 120.6 167 41.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.0e-24 117.1 84 71.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.8e-21 106.7 91 59.3
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 3.4e-19 99.8 58 81.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.7e-18 97.4 57 78.9
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 3.7e-18 96.3 77 62.3
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.4e-17 94.4 81 59.3
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 2.8e-13 80.1 50 70.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 2.6e-11 73.6 108 40.7


User provided reference genes

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