Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05806 Sapria himalayana HOM05D003891 ORTHO05D004802 2.8e-51 204.9 97 100.0
ClCG02G003290 Citrullus lanatus HOM05D003891 ORTHO05D004802 6.2e-19 97.4 82 57.3
Nitab4.5_0001700g0070 Nicotiana tabacum HOM05D003891 ORTHO05D004802 8.2e-19 97.1 45 91.1
Sc08g0002090 Simmondsia chinensis HOM05D003891 ORTHO05D004802 1.4e-18 96.3 46 87.0
TWI75G0797 Tripterygium wilfordii HOM05D003891 ORTHO05D004802 1.8e-18 95.9 67 65.7
Ah.01g017670 Amaranthus hybridus HOM05D003891 ORTHO05D004802 2.4e-18 95.5 45 88.9
SGA_v2.0_scaffold32G13353 Striga asiatica HOM05D003891 ORTHO05D004802 2.4e-18 95.5 67 65.7
vmacro10882 Vaccinium macrocarpon HOM05D003891 ORTHO05D004802 2.4e-18 95.5 45 93.3
Duzib052G0081 Durio zibethinus HOM05D003891 ORTHO05D004802 3.1e-18 95.1 45 88.9
Nn6g31645 Nelumbo nucifera HOM05D003891 ORTHO05D004802 3.1e-18 95.1 45 88.9
Peaxi162Scf00374g00733 Petunia axillaris HOM05D003891 ORTHO05D004802 3.1e-18 95.1 45 86.7
unitig_21.g20520 Utricularia gibba HOM05D003891 ORTHO05D004802 3.1e-18 95.1 67 64.2
ATR0605G040 Amborella trichopoda HOM05D003891 ORTHO05D004802 4.0e-18 94.7 47 87.2
Aqoxy6G01549 Aquilegia oxysepala HOM05D003891 ORTHO05D004802 4.0e-18 94.7 45 86.7
CAN.G234.2 Capsicum annuum HOM05D003891 ORTHO05D004802 4.0e-18 94.7 45 86.7
AUR62010186 Chenopodium quinoa HOM05D003891 ORTHO05D004802 4.0e-18 94.7 47 83.0
AUR62013187 Chenopodium quinoa HOM05D003891 ORTHO05D004802 4.0e-18 94.7 47 83.0
Manes.15G113400 Manihot esculenta HOM05D003891 ORTHO05D004802 4.0e-18 94.7 45 88.9
RcHm_v2.0_Chr6g0281141 Rosa chinensis HOM05D003891 ORTHO05D004802 4.0e-18 94.7 45 86.7
VMungo0464G1760 Vigna mungo HOM05D003891 ORTHO05D004802 4.0e-18 94.7 45 86.7
AL7G15800 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
AT4G35360 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
BcaNung00603 Brassica carinata HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
A01p03200 Brassica napus HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
C01p03550 Brassica napus HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
BolC1t00344H Brassica oleracea HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
BraA01t00305Z Brassica rapa HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
Thhalv10025517m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
Sp7g33150 Schrenkiella parvula HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 91.1
THA.LOC104807410 Tarenaya hassleriana HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 86.7
HPP92_015472 Vanilla planifolia HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 86.7
GSVIVG01023862001 Vitis vinifera HOM05D003891 ORTHO05D004802 5.3e-18 94.4 45 84.4
Atru.chr5.3571 Acer truncatum HOM05D003891 ORTHO05D004802 6.9e-18 94.0 47 85.1
Actinidia26326 Actinidia chinensis HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 86.7
CSS0031527 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 88.9
CSS0037328 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 88.9
Cc09_g10890 Coffea canephora HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 84.4
Dinv14180 Davidia involucrata HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 86.7
ECA233G4850 Erigeron canadensis HOM05D003891 ORTHO05D004802 6.9e-18 94.0 47 85.1
Migut.B00004 Erythranthe guttata HOM05D003891 ORTHO05D004802 6.9e-18 94.0 45 86.7
SalBow1G5213 Salvia bowleyana HOM05D003891 ORTHO05D004802 6.9e-18 94.0 63 66.7
Cpa.g.sc232.5 Carica papaya HOM05D003891 ORTHO05D004802 9.0e-18 93.6 45 86.7
PGR042G1041 Punica granatum HOM05D003891 ORTHO05D004802 9.0e-18 93.6 45 84.4
Hund00096 Selenicereus undatus HOM05D003891 ORTHO05D004802 9.0e-18 93.6 45 84.4
CARHR243690 Cardamine hirsuta HOM05D003891 ORTHO05D004802 1.2e-17 93.2 45 91.1
Eucgr.H04996 Eucalyptus grandis HOM05D003891 ORTHO05D004802 1.2e-17 93.2 45 88.9
Hma1.2p1_0271F.1_g108710 Hydrangea macrophylla HOM05D003891 ORTHO05D004802 1.2e-17 93.2 45 86.7
QL11p056607 Quercus lobata HOM05D003891 ORTHO05D004802 1.2e-17 93.2 45 88.9
CANSAT25G0951 Cannabis sativa HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 86.7
Ciclev10028695m.g Citrus clementina HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 82.2
CsaV3_7G002080 Cucumis sativus L. HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
Gohir.A13G064300 Gossypium hirsutum HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 82.2
Gorai.013G064800 Gossypium raimondii HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 82.2
Lj5C171T9 Lonicera japonica HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
MD05G1141200 Malus domestica HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
MD10G1142600 Malus domestica HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
Solyc10g074590.2 Solanum lycopersicum HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
PGSC0003DMG400016830 Solanum tuberosum HOM05D003891 ORTHO05D004802 1.5e-17 92.8 45 84.4
MELO3C015700.2 Cucumis melo HOM05D003891 ORTHO05D004802 2.0e-17 92.4 45 82.2
HanXRQChr16g0515191 Helianthus annuus HOM05D003891 ORTHO05D004802 2.0e-17 92.4 45 88.9
Sopen10g027080 Solanum pennellii HOM05D003891 ORTHO05D004802 2.0e-17 92.4 45 82.2
Thecc.02G147300 Theobroma cacao HOM05D003891 ORTHO05D004802 2.0e-17 92.4 45 84.4
MSTRG.19945 Avicennia marina HOM05D003891 ORTHO05D004802 2.6e-17 92.0 45 86.7
Glyma.09G154000 Glycine max HOM05D003891 ORTHO05D004802 2.6e-17 92.0 45 84.4
Phvul.004G127600 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 2.6e-17 92.0 45 84.4
Rhsim05G0044600 Rhododendron simsii HOM05D003891 ORTHO05D004802 2.6e-17 92.0 45 84.4
Carub.0007s0494 Capsella rubella HOM05D003891 ORTHO05D004802 3.4e-17 91.7 45 88.9
CiPaw.06G114500 Carya illinoinensis HOM05D003891 ORTHO05D004802 3.4e-17 91.7 45 82.2
PSO210G7370 Papaver somniferum HOM05D003891 ORTHO05D004802 3.4e-17 91.7 45 84.4
PSO761G0136 Papaver somniferum HOM05D003891 ORTHO05D004802 3.4e-17 91.7 45 84.4
FAN27G1799 Fragaria x ananassa HOM05D003891 ORTHO05D004802 4.5e-17 91.3 45 86.7
Lalb_Chr03g0033131 Lupinus albus HOM05D003891 ORTHO05D004802 4.5e-17 91.3 45 84.4
Lalb_Chr19g0131341 Lupinus albus HOM05D003891 ORTHO05D004802 4.5e-17 91.3 45 84.4
MD16G1233000 Malus domestica HOM05D003891 ORTHO05D004802 4.5e-17 91.3 45 82.2
Nitab4.5_0022130g0010 Nicotiana tabacum HOM05D003891 ORTHO05D004802 4.5e-17 91.3 45 86.7
arahy.Tifrunner.gnm1.ann1.BD83WD Arachis hypogaea HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 82.2
arahy.Tifrunner.gnm1.ann1.HVI0X6 Arachis hypogaea HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 82.2
FvH4_2g16941 Fragaria vesca HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 84.4
FAN24G0882 Fragaria x ananassa HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 84.4
Gohir.D13G057500 Gossypium hirsutum HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 80.0
Prupe.8G181200 Prunus persica HOM05D003891 ORTHO05D004802 5.8e-17 90.9 45 82.2
Aa31LG2G14970 Aethionema arabicum HOM05D003891 ORTHO05D004802 7.6e-17 90.5 45 84.4
Duzib132G1166 Durio zibethinus HOM05D003891 ORTHO05D004802 7.6e-17 90.5 67 61.2
MBI01_g17246_MAGBIO Magnolia biondii HOM05D003891 ORTHO05D004802 7.6e-17 90.5 47 78.7
TAR628G0887 Trochodendron aralioides HOM05D003891 ORTHO05D004802 7.6e-17 90.5 45 84.4
Sed0019069 Sechium edule HOM05D003891 ORTHO05D004802 1.0e-16 90.1 61 67.2
CiPaw.05G094100 Carya illinoinensis HOM05D003891 ORTHO05D004802 1.3e-16 89.7 45 84.4
Lj2g0023729 Lotus japonicus HOM05D003891 ORTHO05D004802 1.3e-16 89.7 51 74.5
Psat1g106000 Pisum sativum HOM05D003891 ORTHO05D004802 1.7e-16 89.4 51 74.5
AL3G50220 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 84.4
AT2G17340 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 84.4
Carub.0003s3137 Capsella rubella HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 84.4
Cfa005391 Carpinus fangiana HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 77.8
CDE10G0412 Ceratophyllum demersum HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 80.0
TPR.G10657 Trifolium pratense HOM05D003891 ORTHO05D004802 2.9e-16 88.6 45 82.2
PGSC0003DMG400014681 Solanum tuberosum HOM05D003891 ORTHO05D004802 3.8e-16 88.2 45 82.2
Ca_25233_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 4.9e-16 87.8 45 82.2
Haze_01964 Corylus avellana HOM05D003891 ORTHO05D004802 4.9e-16 87.8 45 77.8
Lsat_1_v5_gn_8_120640 Lactuca sativa HOM05D003891 ORTHO05D004802 4.9e-16 87.8 45 84.4
MD16G1142900 Malus domestica HOM05D003891 ORTHO05D004802 4.9e-16 87.8 45 80.0
Dinv41863 Davidia involucrata HOM05D003891 ORTHO05D004802 8.4e-16 87.0 48 75.0
MD04G1014700 Malus domestica HOM05D003891 ORTHO05D004802 1.1e-15 86.7 45 80.0
Medtr6g060550 Medicago truncatula HOM05D003891 ORTHO05D004802 1.1e-15 86.7 45 77.8
Peaxi162Scf00362g00144 Petunia axillaris HOM05D003891 ORTHO05D004802 1.1e-15 86.7 58 67.2
Lj9A408G77 Lonicera japonica HOM05D003891 ORTHO05D004802 1.4e-15 86.3 45 82.2
Potri.009G169000 Populus trichocarpa HOM05D003891 ORTHO05D004802 1.4e-15 86.3 45 82.2
Sed0009963 Sechium edule HOM05D003891 ORTHO05D004802 1.4e-15 86.3 61 63.9
Zm00001eb381870 Zea mays HOM05D003891 ORTHO05D004802 2.5e-15 85.5 45 77.8
Carub.0003s3136 Capsella rubella HOM05D003891 ORTHO05D004802 4.2e-15 84.7 45 80.0
CAN.G1645.6 Capsicum annuum HOM05D003891 ORTHO05D004802 4.2e-15 84.7 45 77.8
Psat3g195440 Pisum sativum HOM05D003891 ORTHO05D004802 7.1e-15 84.0 51 70.6
Os06g0325500 Oryza sativa ssp. japonica HOM05D003891 ORTHO05D004802 2.1e-14 82.4 45 75.6
Potri.004G207700 Populus trichocarpa HOM05D003891 ORTHO05D004802 3.5e-14 81.6 45 77.8
Sabra04G0139800 Salix brachista HOM05D003891 ORTHO05D004802 4.6e-14 81.3 45 75.6
TPR.G16614 Trifolium pratense HOM05D003891 ORTHO05D004802 1.0e-13 80.1 45 73.3
arahy.Tifrunner.gnm1.ann1.QM8NH2 Arachis hypogaea HOM05D003891 ORTHO05D004802 1.8e-13 79.3 47 74.5
Thhalv10022748m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 1.8e-13 79.3 45 77.8
Lalb_Chr21g0311871 Lupinus albus HOM05D003891 ORTHO05D004802 2.3e-13 79.0 45 75.6
Pp3c16_25870 Physcomitrium patens HOM05D003891 ORTHO05D004802 3.0e-13 78.6 47 68.1
SMO352G0076 Selaginella moellendorffii HOM05D003891 ORTHO05D004802 3.0e-13 78.6 47 68.1
Aa31LG8G14670 Aethionema arabicum HOM05D003891 ORTHO05D004802 6.7e-13 77.4 45 75.6
Medtr1g076720 Medicago truncatula HOM05D003891 ORTHO05D004802 6.7e-13 77.4 46 67.4
Medtr1g076730 Medicago truncatula HOM05D003891 ORTHO05D004802 6.7e-13 77.4 46 67.4
Sp3g30660 Schrenkiella parvula HOM05D003891 ORTHO05D004802 6.7e-13 77.4 45 75.6
ATR0605G170 Amborella trichopoda HOM05D003891 ORTHO05D004802 8.7e-13 77.0 45 75.6
Ca_09894_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 8.7e-13 77.0 45 73.3
Lj5g0000118 Lotus japonicus HOM05D003891 ORTHO05D004802 1.9e-12 75.9 45 71.1
Lalb_Chr21g0311861 Lupinus albus HOM05D003891 ORTHO05D004802 3.3e-12 75.1 45 73.3
AagrBONN_evm.TU.Sc2ySwM_368.2236 Anthoceros agrestis HOM05D003891 ORTHO05D004802 5.7e-12 74.3 47 61.7
AL3G50210 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 5.7e-12 74.3 45 71.1
Carub.0003s3134 Capsella rubella HOM05D003891 ORTHO05D004802 7.4e-12 73.9 45 71.1
CARHR107450 Cardamine hirsuta HOM05D003891 ORTHO05D004802 7.4e-12 73.9 45 68.9
Glyma.20G212400 Glycine max HOM05D003891 ORTHO05D004802 1.3e-11 73.2 76 46.1
Psat6g112760 Pisum sativum HOM05D003891 ORTHO05D004802 1.3e-11 73.2 45 66.7
AT2G17320 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 3.7e-11 71.6 45 68.9
BcaC01g02934 Brassica carinata HOM05D003891 ORTHO05D004802 3.7e-11 71.6 45 68.9
A06p34080 Brassica napus HOM05D003891 ORTHO05D004802 3.7e-11 71.6 45 68.9
C03p58170 Brassica napus HOM05D003891 ORTHO05D004802 3.7e-11 71.6 45 68.9
BolC3t18087H Brassica oleracea HOM05D003891 ORTHO05D004802 3.7e-11 71.6 45 68.9
BraA06t26341Z Brassica rapa HOM05D003891 ORTHO05D004802 4.8e-11 71.2 45 68.9
BcaB08g34723 Brassica carinata HOM05D003891 ORTHO05D004802 6.3e-11 70.9 46 65.2
Nitab4.5_0005657g0030 Nicotiana tabacum HOM05D003891 ORTHO05D004802 6.3e-11 70.9 71 52.1
CBR_g36866 Chara braunii HOM05D003891 ORTHO05D004802 8.2e-11 70.5 45 62.2
Glyma.20G212500 Glycine max HOM05D003891 ORTHO05D004802 3.1e-10 68.6 45 60.0
Phvul.007G111800 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 4.1e-10 68.2 45 60.0
VMungo0720G0968 Vigna mungo HOM05D003891 ORTHO05D004802 4.1e-10 68.2 45 62.2
Mapoly0021s0096 Marchantia polymorpha HOM05D003891 ORTHO05D004802 4.5e-09 64.7 45 62.2


User provided reference genes

Program Settings