Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 8.4e-114 413.7 207 100.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.5e-59 232.3 185 57.3
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 6.5e-58 228.0 185 54.1
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.2e-57 225.3 185 54.1
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.0e-55 218.8 187 52.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.0e-55 218.8 188 53.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 5.2e-55 218.4 185 55.1
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.8e-55 217.6 189 51.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 7.5e-54 214.5 187 50.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 7.5e-54 214.5 189 51.9
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 9.8e-54 214.2 184 51.1
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 9.8e-54 214.2 185 51.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.7e-53 213.4 188 51.1
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.7e-53 213.4 187 52.4
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.8e-53 212.6 185 50.3
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.8e-53 212.6 185 50.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.7e-53 212.2 185 50.3
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 6.3e-53 211.5 188 51.1
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 6.3e-53 211.5 188 51.1
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 8.3e-53 211.1 193 48.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.8e-52 209.9 193 50.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 4.1e-52 208.8 188 51.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 4.1e-52 208.8 190 49.5
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.4e-52 208.4 185 49.7
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 7.0e-52 208.0 190 50.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.0e-52 208.0 187 49.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.6e-51 206.8 188 50.5
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 2.7e-51 206.1 190 48.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.7e-51 206.1 179 50.3
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.5e-51 205.7 195 48.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 3.5e-51 205.7 185 52.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.9e-51 204.9 181 51.9
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 7.7e-51 204.5 196 45.4
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 7.7e-51 204.5 184 51.6
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.0e-50 204.1 191 50.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.0e-50 204.1 196 47.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-50 203.8 193 48.2
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.7e-50 203.4 188 49.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.3e-50 203.0 194 49.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.3e-50 203.0 185 51.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.3e-50 203.0 190 50.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.9e-50 202.6 199 47.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.9e-50 202.6 190 49.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 5.0e-50 201.8 198 49.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.6e-50 201.1 185 50.3
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 8.6e-50 201.1 185 48.6
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.9e-49 199.9 195 48.7
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.9e-49 199.9 186 48.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-49 199.1 178 51.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 5.5e-49 198.4 185 48.1
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.5e-49 198.4 189 47.1
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.2e-49 198.0 192 47.4
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 7.2e-49 198.0 185 51.9
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 7.2e-49 198.0 185 52.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 7.2e-49 198.0 188 47.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 7.2e-49 198.0 185 50.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.2e-48 197.2 195 48.2
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.6e-48 196.8 188 46.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-48 196.1 180 48.3
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-48 196.1 180 48.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-48 196.1 180 51.1
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.8e-48 196.1 182 48.4
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.6e-48 195.7 175 49.7
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 6.1e-48 194.9 195 48.7
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.1e-48 194.9 180 51.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.0e-47 194.1 195 48.7
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-47 193.7 180 50.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.8e-47 193.4 183 49.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-47 192.6 185 46.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 4.0e-47 192.2 185 46.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 4.0e-47 192.2 177 48.0
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 5.2e-47 191.8 185 47.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 5.2e-47 191.8 185 48.1
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.8e-47 191.4 183 49.2
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.8e-47 191.4 183 49.2
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.8e-47 191.4 188 46.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 8.9e-47 191.0 185 47.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 8.9e-47 191.0 185 46.5
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.0e-46 189.9 188 47.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.6e-46 189.5 167 52.7
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.6e-46 189.5 200 45.5
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.6e-46 189.5 161 49.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.4e-46 189.1 183 48.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.4e-46 189.1 181 48.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.4e-46 188.7 180 47.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.4e-46 188.7 184 48.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 5.7e-46 188.3 180 47.8
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 5.7e-46 188.3 180 47.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 5.7e-46 188.3 181 50.8
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 9.8e-46 187.6 182 48.4
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.3e-45 187.2 184 48.9
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.3e-45 187.2 190 44.2
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.3e-45 187.2 188 47.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.7e-45 186.8 185 44.9
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-45 186.8 185 45.9
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-45 186.8 177 48.0
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 2.2e-45 186.4 183 49.2
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 6.3e-45 184.9 215 42.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 6.3e-45 184.9 182 49.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 6.3e-45 184.9 182 51.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 8.3e-45 184.5 184 47.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 9.2e-44 181.0 167 52.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.2e-43 180.6 186 45.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.7e-43 179.5 185 47.0
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.5e-43 179.1 200 47.0
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 7.8e-43 177.9 145 52.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.0e-42 177.6 189 45.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-42 177.2 161 50.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.3e-42 176.4 160 53.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.9e-42 176.0 160 49.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-41 172.9 185 42.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.3e-41 171.4 220 41.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 9.5e-41 171.0 160 50.0
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-40 169.5 208 41.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.6e-40 169.1 211 41.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.2e-39 165.2 204 43.6
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.5e-38 163.7 162 49.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 4.4e-38 162.2 119 55.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 8.3e-37 157.9 189 42.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 5.4e-36 155.2 107 63.6
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.7e-35 152.9 135 47.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 8.6e-34 147.9 107 59.8
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 8.6e-34 147.9 179 44.1
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.6e-32 142.5 228 39.0
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 8.0e-32 141.4 182 39.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.1e-31 139.4 134 47.8
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 4.4e-30 135.6 184 39.7
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.4e-28 129.8 191 40.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.1e-28 129.0 189 39.7
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.2e-22 110.9 121 45.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.5e-22 110.5 153 41.8
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 5.4e-20 102.1 82 52.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.6e-19 99.0 59 64.4
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.2e-13 80.1 61 54.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 3.8e-13 79.3 61 47.5
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 8.4e-13 78.2 71 45.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 3.2e-12 76.3 43 62.8
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.2e-12 75.9 92 44.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.2e-11 74.3 53 56.6
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.1e-11 73.6 142 36.6
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.0e-10 69.7 52 59.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.9e-09 67.0 101 42.6
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-09 66.6 56 48.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 9.6e-09 64.7 51 56.9
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 2.1e-08 63.5 153 32.0
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.0e-07 59.3 50 50.0


User provided reference genes

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