Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 5.8e-124 447.6 230 100.0
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 7.7e-92 340.9 212 80.2
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 6.5e-91 337.8 212 79.2
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 8.5e-91 337.4 212 79.7
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.4e-90 336.7 212 79.7
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 5.5e-90 334.7 212 78.8
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 7.2e-90 334.3 215 75.8
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 7.2e-90 334.3 212 80.2
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.2e-89 333.6 228 73.7
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.6e-89 333.2 212 78.3
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.1e-89 332.8 212 80.2
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.6e-89 332.0 212 78.8
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.0e-88 330.5 212 76.9
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.0e-88 330.5 212 77.8
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.4e-88 330.1 212 76.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-88 330.1 212 76.4
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.8e-88 329.7 212 76.4
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-88 329.3 214 78.5
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.3e-88 329.3 210 77.6
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.3e-88 329.3 210 77.6
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 2.3e-88 329.3 212 77.4
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 8.8e-88 327.4 212 77.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.1e-87 327.0 212 75.9
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.5e-87 326.6 212 76.4
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.5e-87 326.6 212 78.3
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 2.0e-87 326.2 212 75.5
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.0e-87 326.2 210 79.0
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 3.3e-87 325.5 212 74.5
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.4e-87 325.1 212 77.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 4.4e-87 325.1 212 75.5
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 4.4e-87 325.1 212 75.0
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 5.7e-87 324.7 212 75.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.7e-87 324.7 212 76.9
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 7.4e-87 324.3 212 74.5
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 7.4e-87 324.3 228 71.5
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 9.7e-87 323.9 212 76.9
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.3e-86 323.6 212 75.9
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.7e-86 323.2 212 73.6
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.2e-86 322.8 212 73.6
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.2e-86 322.8 212 76.4
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.8e-86 322.4 212 75.9
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 3.7e-86 322.0 212 75.5
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.7e-86 322.0 212 73.6
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.7e-86 322.0 212 76.9
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 6.3e-86 321.2 212 75.5
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 6.3e-86 321.2 212 73.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.1e-85 320.5 199 79.4
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.1e-85 320.5 212 76.9
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-85 320.1 226 70.8
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.8e-85 319.7 212 73.1
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 2.4e-85 319.3 212 75.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 2.4e-85 319.3 221 71.5
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.4e-85 319.3 212 75.0
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 3.1e-85 318.9 212 73.6
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 4.1e-85 318.5 212 73.6
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.1e-85 318.5 212 74.5
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 5.3e-85 318.2 212 75.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 9.1e-85 317.4 212 75.0
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 9.1e-85 317.4 212 73.6
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.5e-84 315.5 212 72.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.5e-84 315.5 212 72.2
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.5e-84 315.5 212 74.5
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 5.9e-84 314.7 212 73.1
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.3e-83 313.5 212 74.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.3e-83 313.5 199 77.9
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.7e-83 313.2 212 71.7
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 2.9e-83 312.4 224 72.8
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 2.9e-83 312.4 212 74.5
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 3.8e-83 312.0 210 73.3
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 5.0e-83 311.6 212 74.5
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.5e-83 311.2 212 73.6
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 6.5e-83 311.2 249 66.3
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 6.5e-83 311.2 212 72.2
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 8.5e-83 310.8 197 77.7
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 8.5e-83 310.8 212 73.6
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.5e-82 310.1 224 71.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.5e-82 310.1 193 79.3
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 7.2e-82 307.8 220 68.2
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 8.0e-81 304.3 213 72.3
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.8e-80 303.1 212 70.8
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 3.0e-80 302.4 212 69.8
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.8e-80 300.8 219 68.9
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 8.8e-80 300.8 212 69.3
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.5e-79 300.1 212 70.3
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.0e-79 299.7 210 69.0
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.0e-79 299.7 208 75.0
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.7e-79 298.1 210 69.0
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 5.7e-79 298.1 212 71.2
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 7.5e-79 297.7 213 69.0
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 7.5e-79 297.7 212 70.3
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 9.7e-79 297.4 210 68.6
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 9.7e-79 297.4 210 69.0
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 9.7e-79 297.4 182 78.0
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-78 297.0 212 70.3
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 4.8e-78 295.0 217 67.3
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 6.3e-78 294.7 210 68.6
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.8e-77 293.1 212 67.9
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.1e-77 292.4 210 67.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.1e-77 290.8 212 67.5
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.6e-76 290.0 212 67.9
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.5e-76 288.9 212 67.9
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 3.5e-76 288.9 210 66.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 4.5e-76 288.5 212 67.9
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 4.5e-76 288.5 212 67.9
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 4.5e-76 288.5 212 67.9
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 5.9e-76 288.1 212 67.9
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 2.2e-75 286.2 212 67.5
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 2.9e-75 285.8 210 67.6
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.9e-75 285.8 210 67.6
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 2.9e-75 285.8 223 64.6
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.8e-75 285.4 224 64.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 8.5e-75 284.3 212 66.0
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.5e-74 283.5 244 60.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.2e-74 282.0 282 57.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.2e-74 282.0 230 62.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 5.5e-74 281.6 212 66.5
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 5.5e-74 281.6 212 66.0
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 8.0e-73 277.7 217 65.0
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.0e-72 277.3 212 67.9
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.4e-71 272.3 201 67.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 5.7e-71 271.6 219 61.2
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 7.5e-71 271.2 212 65.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-70 270.4 205 67.3
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.7e-70 268.9 212 66.5
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.8e-70 268.5 183 75.4
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 8.3e-70 267.7 212 67.9
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.4e-69 266.9 212 66.0
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 4.1e-69 265.4 224 62.9
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.6e-68 263.5 185 71.4
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.5e-68 261.9 211 63.5
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.9e-68 261.5 197 71.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 3.8e-67 258.8 205 62.9
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 5.5e-66 255.0 212 61.8
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.6e-65 253.4 212 59.9
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.8e-65 252.7 212 59.9
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 6.1e-65 251.5 212 60.4
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.1e-65 251.5 281 50.9
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.6e-63 246.1 147 82.3
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-62 243.4 212 58.0
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 5.4e-61 238.4 229 53.7
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 1.9e-58 229.9 212 58.5
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.6e-57 226.9 212 54.7
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 7.5e-55 218.0 147 72.1
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 6.4e-54 214.9 212 52.8
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 5.4e-53 211.8 147 70.1
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.6e-52 208.8 146 75.3
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.0e-52 208.4 206 58.3
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.9e-50 203.4 210 51.9
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 5.6e-50 201.8 120 80.8
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 4.0e-48 195.7 212 47.2
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 6.8e-48 194.9 207 48.8
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-47 193.7 204 53.9
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.8e-40 168.3 91 85.7
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.6e-39 166.4 165 57.0
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.1e-36 156.8 121 69.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 2.0e-31 140.2 101 74.3
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.4e-31 139.4 94 79.8
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 3.0e-27 126.3 100 70.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.0e-27 126.3 147 53.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-25 120.9 118 55.1
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-25 120.9 118 55.1
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.1e-24 117.9 188 39.4
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 5.8e-23 112.1 66 80.3
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.5e-20 102.8 160 39.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 1.3e-19 100.9 67 68.7
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 2.3e-19 100.1 82 62.2
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-15 87.4 64 68.8
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.2e-14 83.6 72 62.5
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 7.1e-13 78.6 82 56.1
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.1e-10 71.2 99 39.4
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.9e-10 70.5 67 55.2
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 1.4e-08 64.3 209 27.3
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-08 63.9 32 78.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.0e-06 58.2 35 80.0
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.2e-06 57.0 123 39.0


User provided reference genes

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