Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 2.4e-37 158.3 77 100.0
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 2.3e-24 115.2 73 71.2
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.9e-23 112.1 73 74.0
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 9.6e-23 109.8 69 76.8
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 9.6e-23 109.8 69 76.8
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.3e-22 109.4 77 68.8
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 1.3e-22 109.4 54 92.6
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.3e-22 109.4 54 92.6
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.3e-22 109.4 54 92.6
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 1.3e-22 109.4 54 92.6
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 1.6e-22 109.0 81 67.9
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 2.8e-22 108.2 54 92.6
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.8e-22 108.2 63 79.4
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 2.8e-22 108.2 63 79.4
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 2.8e-22 108.2 69 71.0
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 2.8e-22 108.2 57 87.7
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 3.7e-22 107.8 54 90.7
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 3.7e-22 107.8 54 90.7
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 4.8e-22 107.5 74 70.3
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 6.3e-22 107.1 82 65.9
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.3e-22 107.1 58 86.2
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 6.3e-22 107.1 58 86.2
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 8.2e-22 106.7 58 86.2
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 8.2e-22 106.7 54 90.7
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 8.2e-22 106.7 54 88.9
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 1.1e-21 106.3 66 78.8
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 1.1e-21 106.3 75 70.7
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.4e-21 105.9 58 84.5
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 1.4e-21 105.9 77 68.8
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 1.8e-21 105.5 57 86.0
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.8e-21 105.5 72 70.8
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 1.8e-21 105.5 54 88.9
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 2.4e-21 105.1 63 79.4
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 2.4e-21 105.1 53 90.6
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 2.4e-21 105.1 54 88.9
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 3.1e-21 104.8 54 88.9
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 5.3e-21 104.0 64 75.0
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 5.3e-21 104.0 75 68.0
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 5.3e-21 104.0 54 87.0
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 5.3e-21 104.0 53 86.8
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 9.0e-21 103.2 68 72.1
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 9.0e-21 103.2 54 85.2
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 9.0e-21 103.2 77 66.2
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 9.0e-21 103.2 53 88.7
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 9.0e-21 103.2 54 85.2
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 9.0e-21 103.2 54 85.2
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 1.2e-20 102.8 83 61.4
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 1.2e-20 102.8 67 71.6
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 1.2e-20 102.8 57 82.5
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 1.2e-20 102.8 75 68.0
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 1.5e-20 102.4 61 78.7
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 3.4e-20 101.3 53 86.8
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 3.4e-20 101.3 61 77.0
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 3.4e-20 101.3 61 77.0
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 3.4e-20 101.3 53 86.8
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 3.4e-20 101.3 54 85.2
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 3.4e-20 101.3 53 86.8
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 4.5e-20 100.9 57 82.5
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 4.5e-20 100.9 64 75.0
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 4.5e-20 100.9 75 69.3
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.5e-20 100.9 54 81.5
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 5.9e-20 100.5 53 86.8
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 5.9e-20 100.5 53 86.8
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 5.9e-20 100.5 53 86.8
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 5.9e-20 100.5 54 83.3
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 5.9e-20 100.5 54 83.3
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 7.6e-20 100.1 53 84.9
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 7.6e-20 100.1 54 81.5
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 1.0e-19 99.8 57 80.7
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 1.0e-19 99.8 57 80.7
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 1.0e-19 99.8 57 80.7
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.3e-19 99.4 53 86.8
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 1.3e-19 99.4 53 84.9
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 1.3e-19 99.4 64 75.0
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.7e-19 99.0 54 85.2
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 2.9e-19 98.2 57 75.4
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 6.5e-19 97.1 60 68.3
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 8.5e-19 96.7 67 68.7
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 8.5e-19 96.7 55 76.4
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.1e-18 96.3 56 73.2
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.1e-18 96.3 56 73.2
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 3.2e-18 94.7 66 65.2
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 4.2e-18 94.4 66 63.6
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 4.2e-18 94.4 54 75.9
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 3.3e-15 84.7 48 83.3
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 4.3e-15 84.3 45 88.9
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 2.2e-14 82.0 59 66.1
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 2.2e-14 82.0 68 58.8
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 2.2e-14 82.0 55 70.9
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 2.8e-14 81.6 48 81.2
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.7e-14 81.3 42 90.5
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 4.8e-14 80.9 51 78.4
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 6.3e-14 80.5 65 63.1
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 8.2e-14 80.1 42 85.7
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 1.1e-13 79.7 41 87.8
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 1.4e-13 79.3 44 81.8
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 1.4e-13 79.3 64 62.5
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 4.1e-13 77.8 50 78.0
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 4.1e-13 77.8 42 83.3
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 1.5e-12 75.9 48 72.9
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 2.0e-12 75.5 60 63.3
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 5.9e-12 73.9 44 77.3
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 7.7e-12 73.6 52 69.2
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 1.0e-11 73.2 38 86.8
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 2.2e-11 72.0 42 76.2
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 2.2e-11 72.0 68 52.9
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 2.2e-11 72.0 39 82.1
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 2.9e-11 71.6 41 78.0
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 3.8e-11 71.2 39 82.1
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 5.7e-07 57.4 68 51.5
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.3e-06 56.2 37 75.7
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.3e-06 56.2 37 75.7
Pp3c2_9610 Physcomitrium patens HOM05D007135 ORTHO05D008880 4.8e-06 54.3 42 59.5
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 8.2e-06 53.5 65 50.8


User provided reference genes

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