Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 5.4e-42 173.7 76 100.0
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 1.5e-31 139.0 74 77.0
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 5.6e-31 137.1 73 76.7
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 5.6e-31 137.1 74 75.7
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 1.4e-29 132.5 74 74.3
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.3e-29 131.7 73 75.3
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.1e-29 131.3 74 74.3
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 8.9e-29 129.8 73 80.8
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 1.2e-28 129.4 72 73.6
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 2.0e-28 128.6 74 71.6
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 2.6e-28 128.3 74 77.0
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 3.4e-28 127.9 74 77.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.3e-27 125.9 74 74.3
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.3e-27 125.9 74 74.3
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.2e-27 125.2 75 70.7
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 2.9e-27 124.8 74 68.9
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.9e-27 124.8 75 70.7
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 3.7e-27 124.4 74 70.3
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.9e-27 124.0 74 73.0
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.9e-27 124.0 74 73.0
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.9e-27 124.0 74 73.0
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 4.9e-27 124.0 74 68.9
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 6.4e-27 123.6 74 71.6
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 6.4e-27 123.6 74 66.2
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 6.4e-27 123.6 65 81.5
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 8.3e-27 123.2 74 71.6
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 8.3e-27 123.2 74 70.3
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 8.3e-27 123.2 74 71.6
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.1e-26 122.9 74 71.6
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 1.1e-26 122.9 74 71.6
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 1.1e-26 122.9 63 77.8
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.4e-26 122.5 74 68.9
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.4e-26 122.5 74 68.9
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 1.9e-26 122.1 69 71.0
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.9e-26 122.1 74 67.6
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 1.9e-26 122.1 73 71.2
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.4e-26 121.7 74 71.6
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 2.4e-26 121.7 67 77.6
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 2.4e-26 121.7 74 71.6
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 3.2e-26 121.3 74 68.9
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 3.2e-26 121.3 74 68.9
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 3.2e-26 121.3 74 70.3
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 4.1e-26 120.9 74 68.9
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 4.1e-26 120.9 61 80.3
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 5.4e-26 120.6 74 73.0
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 7.0e-26 120.2 73 68.5
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 7.0e-26 120.2 74 73.0
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 7.0e-26 120.2 63 77.8
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 7.0e-26 120.2 63 77.8
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 9.2e-26 119.8 74 68.9
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 9.2e-26 119.8 73 68.5
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 9.2e-26 119.8 74 68.9
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 9.2e-26 119.8 74 67.6
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.2e-25 119.4 74 68.9
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.2e-25 119.4 61 78.7
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.2e-25 119.4 61 78.7
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.2e-25 119.4 72 70.8
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.2e-25 119.4 74 67.6
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.2e-25 119.4 74 67.6
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.2e-25 119.4 74 67.6
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.2e-25 119.4 67 74.6
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.2e-25 119.4 74 70.3
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.6e-25 119.0 74 71.6
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.6e-25 119.0 74 67.6
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 2.0e-25 118.6 65 76.9
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 2.0e-25 118.6 65 76.9
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 2.0e-25 118.6 67 73.1
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 2.0e-25 118.6 63 74.6
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.0e-25 118.6 74 70.3
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.7e-25 118.2 71 71.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 2.7e-25 118.2 62 74.2
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 2.7e-25 118.2 58 81.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 3.5e-25 117.9 74 66.2
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 3.5e-25 117.9 65 76.9
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 3.5e-25 117.9 65 76.9
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 3.5e-25 117.9 65 76.9
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 3.5e-25 117.9 65 76.9
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 3.5e-25 117.9 74 67.6
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.5e-25 117.9 55 87.3
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 3.5e-25 117.9 74 67.6
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.5e-25 117.9 74 73.0
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 4.6e-25 117.5 57 82.5
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 4.6e-25 117.5 74 66.2
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 4.6e-25 117.5 74 66.2
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 6.0e-25 117.1 62 75.8
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 6.0e-25 117.1 65 76.9
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 6.0e-25 117.1 55 85.5
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 7.8e-25 116.7 61 77.0
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 7.8e-25 116.7 58 79.3
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.0e-24 116.3 67 70.1
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.0e-24 116.3 63 73.0
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.0e-24 116.3 63 73.0
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.0e-24 116.3 63 73.0
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.0e-24 116.3 58 77.6
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 1.3e-24 115.9 74 64.9
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.3e-24 115.9 74 67.6
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.3e-24 115.9 74 66.2
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 1.3e-24 115.9 67 74.6
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.7e-24 115.5 74 64.9
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.7e-24 115.5 52 90.4
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 1.7e-24 115.5 58 79.3
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 1.7e-24 115.5 58 79.3
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 2.3e-24 115.2 74 68.9
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.3e-24 115.2 74 66.2
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 3.0e-24 114.8 55 83.6
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 3.0e-24 114.8 55 83.6
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 3.0e-24 114.8 55 83.6
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 3.0e-24 114.8 55 83.6
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 3.0e-24 114.8 74 66.2
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 3.0e-24 114.8 59 76.3
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.0e-24 114.0 74 64.9
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 6.6e-24 113.6 52 88.5
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 6.6e-24 113.6 51 90.2
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 8.6e-24 113.2 55 83.6
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 8.6e-24 113.2 67 71.6
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 1.5e-23 112.5 74 66.2
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.3e-23 111.3 52 84.6
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 3.3e-23 111.3 52 82.7
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 3.3e-23 111.3 52 82.7
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 3.3e-23 111.3 52 82.7
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 4.3e-23 110.9 52 80.8
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 5.6e-23 110.5 52 82.7
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 2.1e-22 108.6 62 69.4
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 2.1e-22 108.6 52 80.8
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 2.8e-22 108.2 55 81.8
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.6e-22 107.8 52 78.8
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.6e-22 107.8 52 78.8
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 3.6e-22 107.8 54 79.6
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 4.7e-22 107.5 74 62.2
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 6.2e-22 107.1 67 70.1
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 3.1e-21 104.8 54 77.8
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 4.0e-21 104.4 69 62.3
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 7.5e-20 100.1 52 76.9
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.2e-19 98.6 44 90.9
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 3.7e-19 97.8 45 88.9
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 4.9e-19 97.4 48 81.2
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.2e-17 92.8 66 59.1
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.2e-17 92.8 41 90.2
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.9e-16 87.8 40 85.0
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 9.9e-12 73.2 51 56.9
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 1.4e-10 69.3 35 77.1


User provided reference genes

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