Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.4e-130 469.5 229 100.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.3e-59 233.8 211 55.5
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.9e-59 232.6 215 53.0
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.5e-58 230.3 208 54.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 7.2e-58 228.0 208 54.3
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.2e-57 227.3 204 55.4
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 8.0e-57 224.6 208 53.4
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.4e-56 223.8 211 53.1
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.4e-56 223.8 208 52.9
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 4.0e-56 222.2 208 53.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.0e-56 222.2 208 53.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 4.0e-56 222.2 208 52.9
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.4e-55 219.2 208 52.9
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 4.4e-55 218.8 217 50.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.4e-55 218.8 204 53.4
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.5e-55 218.0 212 51.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.3e-54 217.2 208 51.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.7e-54 216.9 208 53.4
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 2.2e-54 216.5 226 50.0
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 2.8e-54 216.1 208 52.9
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 8.3e-54 214.5 208 51.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.1e-53 212.6 208 51.0
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.5e-52 209.1 208 48.1
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.3e-51 207.2 208 48.1
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.8e-51 205.7 221 48.9
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 5.0e-51 205.3 208 49.5
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-50 204.1 211 50.7
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.9e-50 203.4 203 51.2
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 9.5e-50 201.1 205 49.3
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.8e-49 199.5 211 47.9
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.8e-49 199.5 211 47.9
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.0e-48 197.6 215 47.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-48 196.8 211 47.9
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 2.3e-48 196.4 215 47.0
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.2e-48 195.3 208 47.6
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 5.2e-48 195.3 181 51.4
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-47 193.4 212 48.1
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.0e-47 193.4 212 48.1
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.6e-47 193.0 210 45.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.4e-47 192.2 208 46.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 5.7e-47 191.8 226 46.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 9.8e-47 191.0 161 56.5
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 9.8e-47 191.0 208 47.6
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.8e-46 189.5 207 46.4
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.8e-46 189.5 209 45.9
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.9e-46 188.7 208 47.6
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 4.9e-46 188.7 208 47.1
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 6.3e-46 188.3 210 45.7
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.1e-45 187.6 209 46.9
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.1e-45 187.6 209 48.8
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.4e-45 187.2 208 46.2
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.4e-45 187.2 207 45.4
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.8e-45 186.8 208 44.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.4e-45 186.4 218 45.4
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 4.1e-45 185.7 211 46.0
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.1e-45 185.7 209 47.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 7.0e-45 184.9 208 46.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.0e-45 184.9 221 44.8
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 9.2e-45 184.5 226 45.1
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 9.2e-45 184.5 203 46.3
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.6e-44 183.7 208 45.2
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-44 183.7 182 52.7
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-44 183.7 182 52.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.0e-44 183.3 198 47.5
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 4.5e-44 182.2 216 45.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 4.5e-44 182.2 208 47.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.5e-44 182.2 209 45.0
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 5.9e-44 181.8 211 46.0
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 5.9e-44 181.8 203 47.3
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 5.9e-44 181.8 208 44.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.0e-43 181.0 226 43.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.7e-43 180.3 208 45.2
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.7e-43 180.3 219 43.8
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.3e-43 179.9 204 47.1
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.9e-43 179.5 208 44.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 8.6e-43 177.9 203 44.3
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 8.6e-43 177.9 208 44.7
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 8.6e-43 177.9 216 42.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.1e-42 177.6 220 42.3
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.5e-42 177.2 208 46.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 2.5e-42 176.4 204 44.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.5e-42 176.4 211 42.7
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.5e-42 176.4 226 42.5
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.6e-42 175.3 208 43.3
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.2e-41 174.1 208 43.8
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-41 174.1 203 44.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.2e-41 174.1 211 44.5
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.2e-41 174.1 217 40.6
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.6e-41 173.7 203 44.8
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.6e-41 173.7 208 41.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.6e-41 173.7 211 44.1
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.1e-41 173.3 203 41.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.8e-41 172.9 208 41.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.6e-41 172.6 204 43.6
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.6e-41 172.6 208 40.9
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 3.6e-41 172.6 181 48.6
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 4.7e-41 172.2 208 43.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 4.7e-41 172.2 208 44.7
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 6.1e-41 171.8 203 42.9
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.8e-40 170.2 208 40.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.8e-40 170.2 203 44.3
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.8e-40 170.2 203 44.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.8e-40 170.2 211 42.7
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 2.3e-40 169.9 204 44.6
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-40 169.9 203 42.4
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.3e-40 169.9 203 42.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.1e-40 169.5 212 40.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 4.0e-40 169.1 209 42.1
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.2e-40 168.7 203 42.9
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 6.8e-40 168.3 218 42.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.9e-40 167.9 209 41.6
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 8.9e-40 167.9 203 43.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.2e-39 167.5 209 41.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.0e-39 166.8 208 44.7
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.6e-39 166.4 219 40.6
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 4.4e-39 165.6 212 42.9
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.4e-39 165.6 209 40.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.8e-39 165.2 203 42.4
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.9e-38 162.9 212 42.0
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.4e-37 159.8 204 41.7
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 2.4e-37 159.8 212 38.7
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-37 158.7 208 42.8
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 9.2e-37 157.9 213 42.3
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 2.0e-36 156.8 217 41.5
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.7e-36 156.4 214 42.1
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.3e-35 154.1 215 36.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.3e-34 149.4 198 40.4
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.7e-33 145.6 210 40.5
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.1e-32 144.4 208 39.9
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.1e-32 142.9 136 51.5
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.9e-29 133.7 168 41.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.1e-29 132.5 173 42.8
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 7.1e-29 131.7 214 37.9
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 6.6e-27 125.2 175 39.4
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 9.5e-26 121.3 142 43.0
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 6.2e-25 118.6 225 32.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.8e-24 117.1 176 36.4
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.1e-21 105.1 86 58.1
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.1e-20 103.6 156 36.5
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.7e-20 103.2 99 57.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.8e-20 101.7 105 41.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 7.8e-20 101.7 138 39.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.7e-19 100.5 101 51.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.5e-18 96.7 135 37.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.8e-17 93.2 221 31.2
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.4e-16 90.9 162 38.9
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.1e-13 81.3 102 40.2
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-13 80.9 80 45.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 3.0e-11 73.2 73 47.9
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.6e-07 58.5 49 44.9
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 2.2e-06 57.0 89 36.0


User provided reference genes

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