Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 5.7e-126 454.1 212 100.0
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.8e-47 193.4 128 67.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 2.4e-47 193.0 128 68.0
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.1e-47 192.2 128 67.2
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 6.9e-47 191.4 128 66.4
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.9e-47 191.4 128 66.4
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.9e-47 191.4 128 67.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.1e-47 191.0 128 65.6
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 9.1e-47 191.0 128 67.2
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 9.1e-47 191.0 128 66.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.2e-46 190.7 128 67.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-46 190.7 128 66.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-46 190.7 128 66.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-46 190.3 128 66.4
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.5e-46 190.3 128 64.8
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.5e-46 190.3 128 66.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-46 189.9 128 66.4
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-46 189.9 128 66.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-46 189.9 128 65.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-46 189.5 128 66.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 3.4e-46 189.1 128 65.6
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 5.9e-46 188.3 128 64.8
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 65.6
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 67.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 64.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 64.8
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 65.6
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 7.7e-46 188.0 128 64.8
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.0e-45 187.6 128 64.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.3e-45 187.2 128 64.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.3e-45 187.2 128 63.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.3e-45 187.2 128 62.5
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.3e-45 187.2 128 65.6
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.7e-45 186.8 128 64.8
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.2e-45 186.4 128 64.8
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.2e-45 186.4 128 66.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-45 185.7 128 65.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.8e-45 185.7 128 64.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.0e-45 185.3 125 65.6
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 5.0e-45 185.3 133 60.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 6.5e-45 184.9 128 64.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 8.5e-45 184.5 128 64.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 8.5e-45 184.5 128 64.1
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-44 184.1 128 64.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.4e-44 183.7 128 64.1
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.4e-44 183.7 128 64.1
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.4e-44 183.7 128 64.1
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.9e-44 183.3 128 63.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.5e-44 183.0 128 64.8
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.5e-44 183.0 128 64.1
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.5e-44 183.0 128 62.5
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.2e-44 182.6 128 63.3
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 64.1
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 62.5
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 62.5
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.2e-44 182.2 130 61.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 63.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 62.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 4.2e-44 182.2 128 62.5
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 5.5e-44 181.8 128 62.5
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.5e-44 181.8 127 63.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.4e-44 181.0 133 59.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.4e-44 181.0 128 64.1
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.2e-43 180.6 128 63.3
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.6e-43 180.3 128 60.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.6e-43 180.3 128 61.7
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.1e-43 179.9 128 59.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.1e-43 179.9 128 63.3
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.7e-43 179.5 128 63.3
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.7e-43 179.5 128 64.1
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.7e-43 179.5 126 61.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-43 179.1 128 63.3
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.6e-43 179.1 129 62.8
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.6e-43 179.1 128 63.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.7e-43 178.7 128 63.3
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.1e-43 178.3 125 64.0
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 6.1e-43 178.3 128 61.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 7.9e-43 177.9 128 62.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.0e-42 177.6 128 60.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.0e-42 177.6 128 63.3
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-42 177.6 128 62.5
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-42 177.6 128 62.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.0e-42 177.6 128 60.9
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.4e-42 177.2 128 61.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.4e-42 177.2 128 60.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.8e-42 176.8 128 60.9
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.3e-42 176.4 128 60.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.3e-42 176.4 127 63.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 5.1e-42 175.3 130 60.8
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 5.1e-42 175.3 128 60.9
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.7e-42 174.9 128 60.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 6.7e-42 174.9 128 59.4
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 8.8e-42 174.5 130 60.8
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 8.8e-42 174.5 130 60.8
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-41 174.1 128 60.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.5e-41 173.7 167 50.3
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.6e-41 172.9 130 60.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 4.4e-41 172.2 128 60.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 7.4e-41 171.4 134 56.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 7.4e-41 171.4 126 58.7
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.7e-41 171.0 128 59.4
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.8e-40 168.7 133 58.6
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.3e-40 168.3 133 58.6
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 6.3e-40 168.3 133 58.6
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.1e-39 167.5 133 57.1
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-39 167.2 133 57.9
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.4e-39 167.2 133 57.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-39 166.4 133 57.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.4e-39 166.4 133 57.9
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.1e-39 165.6 133 57.1
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.1e-39 165.6 133 57.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 5.3e-39 165.2 133 57.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.0e-39 164.9 133 57.1
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 7.0e-39 164.9 130 59.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 7.0e-39 164.9 133 56.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 7.0e-39 164.9 133 56.4
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.6e-38 163.7 133 56.4
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.0e-38 163.3 133 57.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.0e-38 163.3 130 57.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.0e-38 163.3 130 57.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.6e-38 162.9 133 56.4
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.5e-38 162.5 133 54.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 5.9e-38 161.8 128 57.0
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-37 160.6 133 54.9
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.3e-37 160.6 133 54.9
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.2e-37 159.8 132 54.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.9e-37 159.5 133 54.9
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 8.5e-37 157.9 133 54.9
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.1e-36 157.5 128 52.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.5e-36 157.1 131 55.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.9e-36 156.8 128 55.5
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.2e-36 155.6 129 53.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 7.2e-36 154.8 131 50.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 9.4e-36 154.5 133 52.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 4.4e-33 145.6 128 48.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.7e-33 145.2 80 76.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.2e-32 143.3 74 81.1
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-31 141.0 99 61.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.0e-30 136.7 74 74.3
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 5.9e-30 135.2 76 71.1
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.3e-29 134.0 74 71.6
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.2e-29 133.3 74 71.6
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-29 132.9 124 54.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.9e-29 132.9 128 46.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.6e-27 127.1 122 49.2
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.3e-24 115.2 66 72.7
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.0e-21 107.8 133 41.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 8.5e-21 104.8 100 50.0
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.1e-19 100.1 128 38.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.0e-10 71.2 59 57.6
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 9.2e-07 58.2 29 75.9


User provided reference genes

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