Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.3e-25 119.0 65 100.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-18 95.5 63 81.0
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.6e-18 95.5 65 80.0
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.6e-18 95.5 63 81.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.9e-18 93.2 63 77.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.0e-17 92.8 63 77.8
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-17 92.4 63 76.2
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.8e-17 92.0 66 78.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.3e-17 91.7 63 76.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.3e-17 91.7 63 76.2
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 3.0e-17 91.3 63 77.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 3.0e-17 91.3 63 79.4
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 3.0e-17 91.3 63 74.6
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.0e-17 91.3 59 81.4
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.9e-17 90.9 63 76.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 5.1e-17 90.5 63 77.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.1e-17 90.5 63 74.6
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 6.7e-17 90.1 65 76.9
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.7e-17 90.1 63 74.6
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 6.7e-17 90.1 63 74.6
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 8.7e-17 89.7 64 79.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 76.2
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 76.2
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 76.2
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 8.7e-17 89.7 59 79.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.7e-17 89.7 63 74.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 76.2
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 74.6
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 74.6
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 73.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.5e-16 89.0 63 73.0
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.9e-16 88.6 65 76.9
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.9e-16 88.6 66 75.8
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.9e-16 88.6 63 74.6
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-16 88.2 66 75.8
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 2.5e-16 88.2 66 75.8
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.5e-16 88.2 59 79.7
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.3e-16 87.8 64 78.1
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.3e-16 87.4 64 76.6
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.3e-16 87.4 64 76.6
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.4e-16 86.7 61 78.7
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 7.4e-16 86.7 64 78.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 7.4e-16 86.7 59 78.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.4e-16 86.7 65 75.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 9.6e-16 86.3 64 75.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.6e-16 86.3 64 76.6
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.6e-16 86.3 63 71.4
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.6e-15 85.5 66 75.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 66 74.2
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.6e-15 85.5 62 77.4
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.6e-15 85.5 59 76.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 66 74.2
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 2.1e-15 85.1 62 75.8
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.1e-15 85.1 69 71.0
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.1e-15 85.1 69 71.0
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.8e-15 84.7 64 73.4
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.8e-15 84.7 60 78.3
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.8e-15 84.7 60 78.3
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.7e-15 84.3 65 70.8
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.8e-15 84.0 67 70.1
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 6.3e-15 83.6 65 72.3
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.2e-15 83.2 65 70.8
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.2e-15 83.2 65 70.8
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.4e-14 82.4 59 76.3
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-14 82.4 65 69.2
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.8e-14 82.0 65 70.8
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.8e-14 82.0 65 70.8
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.1e-14 81.3 64 73.4
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.2e-13 79.3 65 70.8
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 2.6e-13 78.2 59 76.3
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 3.4e-13 77.8 61 72.1
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.4e-13 77.8 66 65.2
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 5.9e-13 77.0 55 81.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.9e-13 77.0 59 74.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 7.6e-13 76.6 61 68.9
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.3e-12 75.9 59 74.6
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.7e-12 75.5 58 75.9
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.8e-12 74.3 63 61.9
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.8e-12 74.3 52 82.7
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 5.0e-12 73.9 63 61.9
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.9e-11 72.0 68 63.2
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.2e-11 71.2 64 60.9
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 3.2e-11 71.2 63 60.3
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.2e-11 71.2 67 59.7
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 5.5e-11 70.5 75 60.0
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.2e-10 69.3 62 61.3
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.2e-10 69.3 62 61.3
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.1e-10 68.6 63 58.7
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 6.1e-10 67.0 61 62.3
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 7.9e-10 66.6 57 68.4
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 7.9e-10 66.6 58 62.1
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.0e-09 66.2 62 62.9
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-09 65.9 60 63.3
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.3e-09 65.9 60 63.3
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.8e-09 65.5 60 63.3
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-09 65.5 57 63.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-09 65.5 60 63.3
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.8e-09 65.5 60 63.3
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.8e-09 65.5 57 63.2
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 3.9e-09 64.3 58 62.1
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.7e-09 63.2 44 77.3
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.5e-08 62.4 63 61.9
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-08 62.4 62 61.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.5e-08 62.4 60 65.0
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.5e-08 61.6 54 63.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.3e-08 61.2 59 57.6
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.3e-08 61.2 59 59.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 56.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 56.9
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.3e-08 60.8 62 56.5
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.4e-08 60.1 52 65.4
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 9.7e-08 59.7 54 64.8
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.3e-07 59.3 55 61.8
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.6e-07 58.9 59 54.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.6e-07 58.9 62 54.8
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-07 58.9 54 63.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 61.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.8e-07 58.2 55 58.2
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.8e-07 58.2 55 60.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.7e-07 57.8 54 63.0
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 4.8e-07 57.4 52 61.5
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.8e-07 57.4 60 55.0
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 6.3e-07 57.0 76 46.1
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 6.3e-07 57.0 52 61.5
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 62 56.5
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-06 56.2 54 59.3
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 58 55.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.4e-06 55.8 51 60.8
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.8e-06 55.5 57 56.1
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-06 55.5 48 62.5
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-06 55.1 60 56.7
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 3.1e-06 54.7 61 52.5
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.1e-06 54.7 61 52.5
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.3e-06 53.9 53 66.0
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 59 49.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.9e-06 53.5 52 59.6
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 59 49.2
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 59 49.2
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 6.9e-06 53.5 51 54.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.0e-06 53.1 54 55.6
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.0e-06 53.1 54 55.6


User provided reference genes

Program Settings