Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 9.6e-177 624.8 831 100.0
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 2.6e-89 334.3 276 60.9
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 5.8e-89 333.2 274 60.6
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 7.6e-89 332.8 274 60.6
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 3.0e-85 320.9 252 62.3
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 8.7e-77 292.7 244 56.6
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 8.7e-77 292.7 255 58.8
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 2.5e-76 291.2 270 54.4
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.3e-76 290.8 252 56.7
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 5.6e-76 290.0 252 56.3
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 2.8e-75 287.7 277 54.9
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 3.6e-75 287.3 278 52.9
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 8.1e-75 286.2 252 55.6
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 1.5e-73 282.0 251 55.0
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.0e-73 281.6 252 54.8
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 2.0e-73 281.6 288 51.4
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 4.5e-73 280.4 286 50.3
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 9.9e-73 279.3 275 53.5
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 3.8e-72 277.3 247 53.4
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.9e-71 275.0 278 52.9
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 5.4e-71 273.5 245 53.1
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 9.3e-71 272.7 245 52.2
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 4.6e-70 270.4 251 52.2
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 7.9e-70 269.6 268 51.1
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.8e-69 268.5 221 57.5
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 3.9e-69 267.3 245 51.8
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 3.7e-67 260.8 244 53.3
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 4.0e-66 257.3 273 49.5
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 9.0e-66 256.1 246 52.0
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.3e-64 252.3 273 48.7
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 6.4e-64 250.0 225 53.8
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.1e-63 249.2 211 59.2
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 1.4e-63 248.8 252 49.6
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 1.4e-63 248.8 255 48.2
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 1.6e-62 245.4 285 46.7
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.3e-59 235.7 250 47.2
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 1.6e-59 235.3 275 47.3
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 2.1e-59 235.0 283 44.5
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 6.2e-59 233.4 250 46.4
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 9.0e-58 229.6 201 56.2
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 1.5e-57 228.8 299 42.1
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 4.5e-57 227.3 256 46.9
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 1.0e-56 226.1 214 52.8
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 4.6e-54 217.2 234 47.0
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.3e-53 215.7 226 46.9
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.8e-53 215.3 267 44.6
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 6.7e-53 213.4 224 47.8
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.5e-52 211.5 262 45.4
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 3.3e-52 211.1 250 44.0
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 5.7e-52 210.3 239 44.8
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 1.3e-51 209.1 214 48.1
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 1.6e-51 208.8 169 57.4
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.8e-50 205.3 214 47.7
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 5.3e-50 203.8 238 44.5
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 5.9e-49 200.3 228 45.6
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 5.9e-49 200.3 201 47.8
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.3e-48 199.1 228 45.2
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 2.9e-48 198.0 223 48.4
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 3.2e-47 194.5 224 44.2
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 2.7e-46 191.4 224 44.2
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.8e-45 188.7 222 43.2
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.8e-45 188.7 151 60.9
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 1.5e-44 185.7 279 39.1
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.6e-41 174.9 119 68.9
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 7.7e-41 173.3 262 37.8
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 3.7e-35 154.5 214 39.3
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 3.2e-31 141.4 149 45.0
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 7.2e-31 140.2 108 58.3
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 7.2e-31 140.2 110 57.3
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 3.6e-30 137.9 174 46.0
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 1.0e-29 136.3 130 53.1
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 8.8e-29 133.3 162 41.4
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 2.2e-27 128.6 190 35.8
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 3.7e-27 127.9 109 56.9
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 5.0e-24 117.5 109 53.2
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.9e-23 115.5 109 49.5
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.9e-23 115.5 109 50.5
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 2.6e-20 105.1 112 50.9
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 9.7e-20 103.2 95 53.7
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 2.4e-18 98.6 99 48.5
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.2e-17 96.3 223 28.7
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 2.7e-17 95.1 230 26.1
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 7.7e-17 93.6 159 37.1
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.0e-16 93.2 223 26.5
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.7e-16 92.4 225 27.1
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 5.0e-16 90.9 214 27.6
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 3.2e-15 88.2 216 28.7
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 7.2e-15 87.0 230 24.3
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 2.7e-14 85.1 110 43.6
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.0e-13 83.2 228 25.4
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.0e-13 83.2 219 24.2
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 1.4e-13 82.8 219 25.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 6.8e-13 80.5 232 27.2
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 1.2e-12 79.7 278 27.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.5e-12 79.3 219 23.7
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.0e-12 79.0 221 25.3
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 3.4e-12 78.2 221 25.3
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 4.4e-12 77.8 221 25.8
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 7.5e-12 77.0 222 24.8
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 9.8e-12 76.6 168 28.0
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 1.3e-11 76.3 222 24.8
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 1.3e-11 76.3 221 25.3
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.3e-11 76.3 120 35.8
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 2.8e-11 75.1 183 26.8
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 2.8e-11 75.1 222 24.8
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 4.8e-11 74.3 183 26.8
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 4.8e-11 74.3 183 26.8
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 4.8e-11 74.3 224 25.0
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 8.3e-11 73.6 202 25.7
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 1.4e-10 72.8 230 24.8
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.2e-09 69.7 189 27.0
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 1.2e-09 69.7 162 27.2
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 1.6e-09 69.3 200 24.5
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 1.6e-09 69.3 200 24.5
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 1.6e-09 69.3 200 24.5
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.6e-09 69.3 188 22.9
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.0e-09 68.9 178 25.8
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 2.0e-09 68.9 204 27.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 4.5e-09 67.8 188 25.0
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 4.5e-09 67.8 231 23.8
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 5.9e-09 67.4 236 24.2
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 7.7e-09 67.0 103 35.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 7.7e-09 67.0 221 24.9
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 7.7e-09 67.0 179 24.0
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 1.0e-08 66.6 201 25.9
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 1.0e-08 66.6 199 27.1
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.0e-08 66.6 168 26.2
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 1.0e-08 66.6 200 25.5
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 1.3e-08 66.2 200 24.0
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 1.3e-08 66.2 200 24.0
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.3e-08 66.2 189 25.9
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 1.3e-08 66.2 197 24.9
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 1.7e-08 65.9 165 26.7
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 2.3e-08 65.5 149 28.2
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 3.8e-08 64.7 178 24.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 3.8e-08 64.7 127 31.5
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.8e-08 64.7 216 24.1
A06p08270 Brassica napus HOM05D002890 ORTHO05D009847 5.0e-08 64.3 230 22.6
BraA06t24026Z Brassica rapa HOM05D002890 ORTHO05D009847 5.0e-08 64.3 198 24.2
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 5.0e-08 64.3 193 25.4
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 5.0e-08 64.3 165 23.0
DCAR_002103 Daucus carota HOM05D007455 ORTHO05D009431 5.0e-08 64.3 159 27.7
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.0e-08 64.3 195 25.6
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 6.6e-08 63.9 181 24.9
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 6.6e-08 63.9 200 24.5
arahy.Tifrunner.gnm1.ann1.NUL68I Arachis hypogaea HOM05D002890 ORTHO05D009847 8.6e-08 63.5 210 24.3
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 1.1e-07 63.2 197 25.4
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 1.1e-07 63.2 181 23.2
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-07 63.2 199 28.1
arahy.Tifrunner.gnm1.ann1.59TWC6 Arachis hypogaea HOM05D002890 ORTHO05D009847 1.5e-07 62.8 205 24.4
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 1.5e-07 62.8 154 25.3
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-07 62.8 201 25.4
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.9e-07 62.4 200 25.5
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 2.5e-07 62.0 172 29.1
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 2.5e-07 62.0 209 23.9
Atru.chr10.2229 Acer truncatum HOM05D002890 ORTHO05D009847 4.2e-07 61.2 189 25.9
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 4.2e-07 61.2 146 28.1
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 4.2e-07 61.2 117 35.9
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 5.5e-07 60.8 171 24.6
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 5.5e-07 60.8 202 25.2
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 5.5e-07 60.8 175 28.0
HPP92_012317 Vanilla planifolia HOM05D002890 ORTHO05D009847 5.5e-07 60.8 174 24.7
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.2e-06 59.7 170 23.5
SGA_v2.0_scaffold496G52473 Striga asiatica HOM05D007455 ORTHO05D009431 1.2e-06 59.7 202 24.3
Oeu059257.1 Olea europaea HOM05D002453 ORTHO05D008746 1.6e-06 59.3 196 25.5
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.1e-06 58.9 122 31.1
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.8e-06 58.5 197 22.8
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 3.6e-06 58.2 158 27.8
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 3.6e-06 58.2 68 41.2
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 3.6e-06 58.2 156 25.6
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 3.6e-06 58.2 156 25.6
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 4.7e-06 57.8 144 26.4
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 6.1e-06 57.4 125 28.0
Cc07_g11950 Coffea canephora HOM05D006556 ORTHO05D008146 8.0e-06 57.0 253 22.1
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 8.0e-06 57.0 185 25.9
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 8.0e-06 57.0 147 28.6
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 8.0e-06 57.0 212 27.8
Thecc.06G220600 Theobroma cacao HOM05D002890 ORTHO05D009847 8.0e-06 57.0 123 26.8


User provided reference genes

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