Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 9.7e-103 376.7 177 100.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 8.1e-49 197.6 174 60.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.8e-48 196.4 175 60.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.1e-48 195.7 174 60.3
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 4.0e-48 195.3 178 59.6
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-48 195.3 178 59.6
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.4e-47 191.8 175 59.4
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.4e-47 191.8 175 59.4
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 2.9e-46 189.1 176 58.5
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.9e-46 188.3 173 59.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.6e-44 183.3 176 58.0
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 6.0e-44 181.4 174 56.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.7e-43 179.9 221 49.3
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.3e-43 179.5 195 53.8
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 3.0e-43 179.1 175 57.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-43 178.7 176 57.4
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.2e-39 167.2 227 47.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-37 160.2 204 48.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-35 152.9 254 40.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.5e-34 149.4 174 48.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.5e-34 149.4 273 39.2
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.5e-34 149.4 195 49.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.3e-34 149.1 230 43.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.6e-34 148.3 316 36.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 6.2e-33 144.8 140 57.1
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-32 144.1 167 46.1
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 4.5e-31 138.7 78 79.5
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.5e-31 138.7 79 79.7
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.3e-30 137.1 264 38.3
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-30 136.7 121 60.3
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-30 136.7 121 60.3
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-30 136.7 121 60.3
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.7e-30 136.7 132 58.3
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.7e-30 136.7 132 58.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-30 135.6 335 33.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-30 135.6 335 33.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.1e-28 129.8 195 42.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-28 129.8 75 78.7
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 3.3e-26 122.5 309 33.0
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-25 119.8 76 72.4
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.7e-25 119.0 139 51.8
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.1e-25 117.9 77 75.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.4e-24 117.1 345 30.7
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-24 115.9 99 58.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 5.3e-24 115.2 67 80.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.0e-23 113.2 67 82.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.0e-23 113.2 67 80.6
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.6e-23 112.8 175 43.4
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.5e-23 112.1 67 80.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 4.5e-23 112.1 67 80.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 4.5e-23 112.1 67 80.6
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 4.5e-23 112.1 67 80.6
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 4.5e-23 112.1 67 80.6
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 5.8e-23 111.7 67 80.6
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 5.8e-23 111.7 67 80.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.0e-22 110.9 67 80.6
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.0e-22 110.9 67 80.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.3e-22 110.5 67 79.1
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.9e-22 109.4 67 79.1
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.9e-22 109.4 67 79.1
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.9e-22 109.4 67 79.1
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-22 109.0 67 77.6
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 3.8e-22 109.0 67 79.1
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 8.4e-22 107.8 67 79.1
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 8.4e-22 107.8 67 77.6
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 8.4e-22 107.8 67 77.6
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-21 107.5 67 79.1
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-21 107.5 67 79.1
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-21 107.5 67 79.1
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 3.2e-21 105.9 67 76.1
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.5e-21 105.1 72 72.2
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.5e-21 105.1 72 72.2
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 7.1e-21 104.8 64 81.2
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 6.0e-20 101.7 83 61.4
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 6.0e-20 101.7 83 61.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 6.0e-20 101.7 83 61.4
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.3e-19 100.5 81 63.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.3e-19 99.8 81 63.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.7e-19 98.2 81 59.3
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.1e-18 97.4 81 61.7
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.3e-18 95.9 81 60.5
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-17 94.0 59 76.3
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.3e-17 94.0 81 59.3
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.3e-17 94.0 81 59.3
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-17 94.0 81 59.3
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-17 93.6 81 59.3
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.1e-17 93.2 81 59.3
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.8e-17 92.0 81 59.3
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 4.8e-17 92.0 81 59.3
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.2e-17 91.3 87 57.5
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 4.1e-16 89.0 81 56.8
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 57.8
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 57.8
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 57.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 57.8
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 5.3e-16 88.6 73 61.6
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 56.6
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.3e-16 88.6 83 56.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.2e-15 87.4 83 57.8
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.2e-15 87.4 81 54.3
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.5e-15 87.0 83 57.8
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.5e-15 87.0 83 57.8
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.5e-15 87.0 83 57.8
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.5e-15 87.0 83 57.8
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-15 86.3 56 71.4
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 3.4e-15 85.9 83 56.6
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.0e-14 84.3 81 55.6
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.0e-14 84.3 83 56.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-14 84.0 83 55.4
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.3e-14 84.0 81 55.6
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 3.8e-14 82.4 77 54.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 8.4e-14 81.3 80 53.8
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-13 80.5 48 79.2
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.1e-12 75.1 81 50.6
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-10 70.9 43 76.7
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 5.7e-10 68.6 45 73.3
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.6e-09 67.0 61 57.4
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.6e-09 67.0 48 64.6
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.8e-09 66.2 66 56.1
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.8e-09 66.2 66 56.1
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 3.7e-09 65.9 54 63.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-08 64.3 49 61.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-08 62.8 85 48.2
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 3.1e-08 62.8 48 64.6
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 6.9e-08 61.6 62 50.0
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.6e-07 59.7 81 46.9


User provided reference genes

Program Settings