Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 2.1e-241 838.6 413 100.0
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.5e-133 479.6 377 64.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.0e-131 472.6 373 63.0
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 6.6e-126 454.9 378 62.7
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 5.6e-125 451.8 379 61.2
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 5.6e-117 425.2 375 57.9
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 2.1e-116 423.3 376 57.4
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 3.6e-116 422.5 370 59.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 8.9e-115 417.9 381 59.3
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.2e-114 417.5 390 58.2
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 7.5e-114 414.8 369 58.0
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.3e-113 414.1 380 58.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.9e-113 412.9 377 58.1
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 8.3e-113 411.4 375 59.5
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.4e-112 409.8 376 58.5
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 3.2e-112 409.5 378 57.1
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 5.4e-112 408.7 379 57.5
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.6e-111 407.1 385 57.4
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 6.0e-111 405.2 372 57.8
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 7.8e-111 404.8 375 58.4
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.7e-110 403.7 383 55.6
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 2.3e-110 403.3 370 57.6
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 3.0e-110 402.9 365 59.5
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.9e-110 402.5 369 58.5
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.9e-110 402.5 369 58.0
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 5.0e-110 402.1 370 58.9
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 5.0e-110 402.1 387 55.6
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 5.0e-110 402.1 379 56.5
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 1.1e-109 401.0 376 58.0
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.1e-109 401.0 374 58.0
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 5.6e-109 398.7 348 60.1
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.3e-109 398.3 386 56.2
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 9.5e-109 397.9 377 56.8
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 9.5e-109 397.9 369 57.7
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.2e-108 397.5 386 56.0
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.1e-108 396.7 385 56.6
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 2.8e-108 396.4 378 57.1
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.7e-108 395.6 380 57.1
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 6.2e-108 395.2 382 57.9
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.1e-107 394.4 381 56.7
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.0e-107 392.5 370 57.6
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 8.9e-107 391.3 370 56.8
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.5e-106 390.6 375 57.6
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 2.0e-106 390.2 375 57.6
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 4.4e-106 389.0 346 59.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 4.4e-106 389.0 390 54.6
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 7.5e-106 388.3 375 54.9
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 9.8e-106 387.9 378 56.3
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.9e-104 383.6 376 54.5
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.2e-104 382.9 378 55.6
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 9.2e-104 381.3 377 56.0
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.6e-103 379.0 377 55.2
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 4.6e-103 379.0 378 55.6
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.0e-102 377.9 379 53.8
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.3e-102 376.7 378 56.1
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 5.1e-102 375.6 389 54.0
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 8.6e-102 374.8 389 53.0
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.3e-101 372.5 389 53.2
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 7.3e-101 371.7 378 54.2
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 9.5e-101 371.3 367 55.9
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.6e-100 369.4 399 51.9
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.6e-100 369.4 379 54.6
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 4.7e-100 369.0 338 55.9
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 6.2e-100 368.6 389 53.0
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.4e-99 367.5 345 58.0
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 3.1e-99 366.3 379 52.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 5.2e-99 365.5 357 54.9
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.5e-98 364.0 375 55.7
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.5e-98 364.0 368 56.8
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 3.4e-98 362.8 360 56.1
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.3e-97 360.9 371 54.4
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 2.4e-96 356.7 371 52.8
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 7.1e-96 355.1 374 52.1
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 9.2e-96 354.8 365 54.2
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 2.7e-95 353.2 365 55.3
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 4.6e-95 352.4 363 52.9
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 6.0e-95 352.1 377 52.5
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.0e-94 351.3 377 52.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-94 350.5 360 54.2
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 2.3e-94 350.1 363 54.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 2.3e-94 350.1 367 52.9
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 3.0e-94 349.7 367 52.9
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 3.0e-94 349.7 363 54.0
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 6.6e-94 348.6 367 52.9
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.5e-93 347.4 394 49.5
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.5e-93 347.4 364 54.9
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.5e-93 347.4 372 52.4
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.5e-93 347.4 330 54.5
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 2.5e-93 346.7 377 52.8
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.5e-93 346.7 366 54.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 2.5e-93 346.7 387 52.5
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 3.3e-93 346.3 362 54.4
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 7.3e-93 345.1 366 53.0
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 9.6e-93 344.7 363 54.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 1.2e-92 344.4 368 51.1
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.8e-91 340.5 387 51.2
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 6.8e-91 338.6 348 51.7
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.2e-90 337.8 375 51.7
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.2e-90 337.8 373 51.7
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 2.6e-90 336.7 382 49.2
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 9.9e-90 334.7 370 51.9
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 2.2e-89 333.6 374 52.1
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 3.9e-86 322.8 382 47.9
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.6e-84 317.4 361 50.7
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 2.1e-84 317.0 350 48.3
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 1.4e-83 314.3 281 58.4
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 1.5e-82 310.8 394 42.9
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.3e-81 307.8 375 48.8
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 9.3e-80 301.6 353 48.4
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.1e-77 294.7 326 49.4
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.9e-73 279.3 252 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 6.4e-73 278.9 330 44.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 8.4e-73 278.5 327 46.5
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.5e-71 273.1 283 55.1
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.7e-70 268.9 290 51.7
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 8.1e-68 261.9 341 47.5
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 8.1e-68 261.9 341 47.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.1e-59 235.0 356 39.3
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.3e-57 228.0 169 63.3
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 6.7e-54 215.7 290 45.5
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.5e-53 214.5 290 45.2
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 5.0e-49 199.5 220 52.3
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.3e-38 164.1 201 47.3
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 6.7e-38 162.5 205 45.9
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 7.0e-35 152.5 365 31.2
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 4.0e-30 136.7 364 32.7
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.6e-29 134.0 82 72.0
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.7e-28 131.3 186 39.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.4e-27 128.3 106 58.5
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 8.5e-25 119.0 166 45.8
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.5e-24 117.5 85 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.7e-23 114.0 178 39.9
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 8.8e-22 109.0 146 45.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.6e-21 107.5 119 47.1
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 7.5e-13 79.3 65 52.3
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.7e-12 78.2 184 29.3
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 4.1e-11 73.6 54 63.0
SHI27432 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-09 68.6 35 82.9
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 6.6e-09 66.2 41 70.7
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.3e-08 63.9 225 28.0
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.8e-06 58.2 162 25.3
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.8e-06 58.2 77 46.8
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 2.3e-06 57.8 86 38.4


User provided reference genes

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