Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.1e-117 424.5 222 100.0
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 9.5e-63 244.2 146 81.5
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 6.1e-62 241.5 146 82.2
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 4.0e-61 238.8 146 80.1
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.0e-61 238.8 146 80.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.0e-61 238.8 146 80.1
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 4.0e-61 238.8 146 80.1
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 2.6e-60 236.1 146 79.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 2.6e-60 236.1 146 78.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 2.6e-60 236.1 146 78.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 1.7e-59 233.4 146 78.8
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 2.2e-59 233.0 146 78.1
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 2.8e-59 232.6 146 78.8
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 6.3e-59 231.5 146 77.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 6.3e-59 231.5 146 77.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 1.8e-58 229.9 146 76.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 3.1e-58 229.2 146 77.4
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 1.2e-57 227.3 146 76.0
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 2.0e-57 226.5 146 76.7
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 3.5e-57 225.7 146 74.7
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 4.5e-57 225.3 146 74.0
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.7e-56 223.4 146 75.3
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 2.9e-56 222.6 146 70.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.0e-56 221.9 146 75.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.5e-55 220.3 146 75.3
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.5e-55 220.3 146 75.3
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 1.5e-55 220.3 146 75.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 1.9e-55 219.9 146 73.3
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 4.3e-55 218.8 146 72.6
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 9.5e-55 217.6 146 72.6
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 1.2e-54 217.2 146 71.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 1.2e-54 217.2 146 72.6
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 1.6e-54 216.9 146 73.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 3.6e-54 215.7 146 71.2
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 6.1e-54 214.9 146 71.2
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 8.0e-54 214.5 146 71.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 2.3e-53 213.0 146 71.2
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 2.3e-53 213.0 146 72.6
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 2.3e-53 213.0 146 71.2
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.8e-53 211.5 146 71.2
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 1.2e-52 210.7 146 72.6
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 1.2e-52 210.7 146 71.2
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 1.5e-52 210.3 146 74.0
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 1.5e-52 210.3 200 59.0
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 2.6e-52 209.5 146 73.3
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 9.8e-52 207.6 146 69.2
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 1.3e-51 207.2 146 71.2
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.3e-51 207.2 146 68.5
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 1.3e-51 207.2 146 68.5
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 1.7e-51 206.8 146 67.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 2.2e-51 206.5 147 72.1
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 2.2e-51 206.5 146 72.6
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 2.9e-51 206.1 147 72.1
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 2.9e-51 206.1 147 72.1
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 2.9e-51 206.1 146 70.5
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 3.7e-51 205.7 146 72.6
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 3.7e-51 205.7 146 72.6
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 3.7e-51 205.7 146 71.2
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 3.7e-51 205.7 146 72.6
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 6.4e-51 204.9 144 70.8
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 8.3e-51 204.5 146 71.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 8.3e-51 204.5 146 71.9
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 8.3e-51 204.5 146 70.5
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 8.3e-51 204.5 146 70.5
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 8.3e-51 204.5 168 62.5
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 1.4e-50 203.8 146 66.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 1.4e-50 203.8 146 66.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 1.8e-50 203.4 146 71.2
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 1.8e-50 203.4 147 70.7
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 1.8e-50 203.4 146 71.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 1.8e-50 203.4 146 71.2
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 1.8e-50 203.4 147 70.7
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.0e-50 201.4 146 65.1
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 9.2e-50 201.1 155 65.2
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 9.2e-50 201.1 146 67.1
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 1.2e-49 200.7 146 69.9
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 1.6e-49 200.3 190 59.5
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 3.5e-49 199.1 146 68.5
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 4.6e-49 198.7 146 66.4
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 4.6e-49 198.7 146 71.2
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 1.0e-48 197.6 146 67.8
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.0e-48 197.6 159 62.3
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 3.0e-48 196.1 146 67.1
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 3.9e-48 195.7 146 69.9
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 5.0e-48 195.3 146 66.4
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 8.6e-48 194.5 146 65.8
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.9e-47 193.4 146 65.8
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 3.3e-47 192.6 146 67.1
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 3.3e-47 192.6 146 67.1
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 2.1e-46 189.9 148 67.6
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 2.1e-46 189.9 145 62.1
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 1.4e-45 187.2 146 61.0
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 2.3e-45 186.4 146 65.1
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 2.2e-43 179.9 148 64.2
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 1.9e-42 176.8 146 62.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 7.0e-42 174.9 211 47.9
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 9.2e-42 174.5 128 69.5
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 9.2e-42 174.5 131 64.9
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.7e-41 172.9 202 52.0
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 4.6e-41 172.2 129 67.4
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 4.6e-41 172.2 238 43.3
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.3e-40 170.6 114 74.6
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 3.0e-40 169.5 172 52.9
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 1.5e-39 167.2 112 71.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 5.6e-39 165.2 147 58.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 6.2e-38 161.8 190 50.5
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 1.8e-37 160.2 149 53.0
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 3.4e-36 156.0 145 51.0
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 1.4e-34 150.6 146 56.2
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 1.9e-34 150.2 166 48.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 2.4e-34 149.8 144 52.1
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-33 145.2 141 57.4
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-33 145.2 141 57.4
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-33 145.2 141 57.4
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-33 145.2 141 57.4
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-33 145.2 141 57.4
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.8e-33 144.8 141 56.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.1e-32 142.1 141 56.7
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 5.1e-32 142.1 141 56.7
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 7.3e-31 138.3 97 68.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.0e-25 118.6 128 52.3
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-24 117.9 128 52.3
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-20 102.8 118 50.0
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 7.6e-20 101.7 59 84.7
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 1.6e-17 94.0 86 53.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 3.9e-16 89.4 110 43.6
TAR237G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.9e-07 60.5 47 66.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 7.4e-07 58.5 42 71.4


User provided reference genes

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