Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 7.3e-228 793.5 386 100.0
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.1e-119 434.1 393 56.5
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.9e-115 419.5 399 53.9
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 8.3e-115 417.9 393 53.4
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 2.7e-113 412.9 381 55.4
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.1e-111 407.5 393 53.2
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 7.3e-111 404.8 402 52.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 3.6e-110 402.5 393 53.7
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 4.0e-109 399.1 402 52.5
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 8.9e-109 397.9 394 52.5
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 8.9e-109 397.9 391 52.7
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.5e-108 397.1 395 52.4
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 2.0e-108 396.7 397 52.4
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.8e-108 394.4 401 51.9
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 3.7e-107 392.5 394 51.5
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 8.3e-107 391.3 387 50.4
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-106 391.0 400 51.2
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-106 391.0 400 51.0
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 2.4e-106 389.8 390 49.5
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 3.2e-106 389.4 400 51.0
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 3.2e-106 389.4 389 49.6
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.6e-105 387.1 407 50.9
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 2.0e-105 386.7 391 52.4
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 2.7e-105 386.3 389 50.9
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.7e-105 386.3 401 52.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 2.7e-105 386.3 394 51.8
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 6.0e-105 385.2 397 51.9
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.3e-104 384.0 388 49.2
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.9e-104 382.5 386 52.1
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 5.0e-104 382.1 396 50.8
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 8.6e-104 381.3 401 51.1
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 7.3e-103 378.3 397 51.1
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 9.5e-103 377.9 381 49.9
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.8e-102 376.3 395 48.9
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 3.6e-102 375.9 392 50.8
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 4.7e-102 375.6 385 50.9
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 4.7e-102 375.6 385 51.2
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 4.7e-102 375.6 391 50.4
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-101 374.4 385 52.2
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.1e-101 374.4 385 52.2
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.4e-101 374.0 399 49.9
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 1.8e-101 373.6 396 50.8
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 2.3e-101 373.2 400 49.8
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 3.1e-101 372.9 385 51.4
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.5e-100 370.5 402 50.2
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.5e-100 370.5 401 48.9
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 2.6e-100 369.8 383 52.2
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 3.4e-100 369.4 389 49.9
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 3.4e-100 369.4 376 49.5
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 4.4e-100 369.0 394 49.5
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 7.5e-100 368.2 411 48.9
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 9.9e-100 367.9 391 50.6
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.3e-99 367.5 396 49.7
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 3.7e-99 365.9 392 50.5
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 4.9e-99 365.5 399 48.4
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 6.4e-99 365.2 400 49.0
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 8.3e-99 364.8 385 49.9
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 8.3e-99 364.8 405 49.1
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.1e-98 364.4 382 50.3
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.9e-98 363.6 399 48.9
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 5.4e-98 362.1 300 59.3
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 9.2e-98 361.3 392 48.2
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.6e-97 359.0 371 50.7
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 7.8e-97 358.2 391 49.4
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.3e-96 356.7 384 50.8
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.3e-96 356.7 437 44.2
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.3e-95 352.8 395 45.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.8e-94 349.7 331 53.8
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 3.6e-94 349.4 330 54.2
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 8.1e-94 348.2 394 45.9
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.4e-93 347.4 385 49.1
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 5.2e-93 345.5 396 48.2
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 2.9e-91 339.7 389 47.0
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 4.9e-91 339.0 398 47.7
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.0e-88 329.7 447 42.7
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 5.1e-88 328.9 398 46.2
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 6.6e-88 328.6 367 48.2
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.3e-87 326.2 402 46.3
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 5.6e-87 325.5 377 48.0
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.5e-84 317.4 384 45.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.0e-84 317.0 307 53.1
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 9.9e-84 314.7 385 44.7
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.2e-81 307.8 412 43.7
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 6.0e-81 305.4 327 48.9
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.0e-80 304.7 273 56.4
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.1e-74 284.6 323 47.4
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.6e-73 280.8 316 47.5
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 7.9e-73 278.5 331 46.8
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 3.9e-72 276.2 460 38.3
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 2.8e-70 270.0 221 58.8
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 6.2e-70 268.9 421 39.7
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 8.4e-67 258.5 384 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.9e-66 257.3 319 45.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.4e-58 231.1 388 36.9
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.0e-56 224.9 384 37.5
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.3e-54 218.0 273 42.9
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.9e-52 209.1 163 59.5
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.3e-47 193.0 270 41.9
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 9.7e-47 191.8 278 41.7
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-46 190.7 142 64.1
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.2e-43 180.6 293 37.2
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.1e-42 178.3 259 39.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.1e-42 178.3 128 63.3
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 5.5e-42 176.0 105 78.1
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.2e-41 174.9 285 39.3
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 5.1e-40 169.5 139 57.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 5.7e-39 166.0 244 38.9
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 2.8e-38 163.7 234 37.6
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.3e-37 159.5 152 52.6
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 3.8e-35 153.3 92 75.0
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.2e-34 150.2 119 55.5
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 7.2e-34 149.1 223 38.1
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.8e-32 144.4 89 75.3
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-32 143.7 112 59.8
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 3.0e-32 143.7 102 61.8
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 3.6e-25 120.2 106 56.6
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.0e-24 118.6 80 65.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 3.1e-21 107.1 131 44.3
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-19 101.3 68 69.1
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 1.2e-17 95.1 208 30.8
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 3.4e-15 87.0 92 44.6
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 3.4e-15 87.0 92 44.6
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 7.5e-15 85.9 49 69.4
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 4.1e-13 80.1 86 46.5
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.5e-10 70.9 88 47.7
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.8e-09 67.4 64 53.1
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 4.7e-09 66.6 64 53.1
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 1.8e-08 64.7 77 50.6
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.4e-07 60.1 40 62.5
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 5.7e-07 59.7 40 60.0


User provided reference genes

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