Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 3.7e-230 801.2 407 100.0
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 9.1e-88 328.2 323 57.0
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 9.1e-88 328.2 326 55.5
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 9.1e-88 328.2 325 56.6
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 2.7e-87 326.6 357 52.9
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 1.0e-86 324.7 323 56.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.3e-86 324.3 338 53.8
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.3e-86 324.3 338 53.8
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 1.3e-86 324.3 318 55.3
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 1.7e-86 323.9 327 55.0
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 6.5e-86 322.0 327 55.0
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 4.2e-85 319.3 319 54.2
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.1e-84 317.0 348 51.1
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 2.7e-84 316.6 323 54.5
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 2.7e-84 316.6 318 54.1
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 3.0e-83 313.2 341 51.3
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 8.8e-83 311.6 323 53.3
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.2e-82 311.2 325 52.3
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.5e-82 310.8 323 51.1
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 1.5e-82 310.8 323 53.6
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.6e-82 310.1 326 53.4
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 2.6e-82 310.1 322 53.1
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 3.4e-82 309.7 325 53.5
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 5.7e-82 308.9 322 52.8
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 7.5e-82 308.5 327 52.0
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 7.5e-82 308.5 327 54.1
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 9.8e-82 308.1 357 51.3
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.3e-81 307.8 328 53.0
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 3.7e-81 306.2 349 50.4
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 4.8e-81 305.8 351 49.9
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 6.3e-81 305.4 330 52.1
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.1e-80 304.7 323 54.2
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 1.4e-80 304.3 325 51.7
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 1.8e-80 303.9 327 52.0
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 3.1e-80 303.1 321 51.4
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 4.1e-80 302.8 309 54.7
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 4.1e-80 302.8 316 53.2
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 5.4e-80 302.4 327 52.3
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 5.4e-80 302.4 349 48.7
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 7.0e-80 302.0 320 53.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 9.1e-80 301.6 326 52.1
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 9.1e-80 301.6 322 53.1
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 3.5e-79 299.7 315 52.7
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 4.5e-79 299.3 320 52.8
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 5.9e-79 298.9 323 51.4
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.9e-79 298.9 325 51.7
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 2.9e-78 296.6 328 50.6
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.9e-78 296.6 316 52.5
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 5.0e-78 295.8 353 49.6
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 6.6e-78 295.4 348 48.0
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 2.5e-77 293.5 340 47.6
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 3.3e-77 293.1 314 50.3
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 4.2e-77 292.7 313 51.8
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 5.5e-77 292.4 317 51.1
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.2e-76 291.2 317 50.8
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.6e-76 290.8 350 48.0
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 4.7e-76 289.3 317 49.8
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.1e-76 288.9 318 50.9
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.0e-75 288.1 350 46.3
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 1.4e-75 287.7 328 50.6
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 1.8e-75 287.3 325 50.5
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 3.0e-75 286.6 346 48.3
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 3.0e-75 286.6 351 47.3
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.0e-75 286.6 349 46.4
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 3.0e-75 286.6 314 50.3
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.9e-75 285.0 318 50.6
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 8.9e-75 285.0 313 50.8
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 2.0e-74 283.9 352 47.2
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 2.0e-74 283.9 320 50.3
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 2.0e-74 283.9 317 49.5
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 2.6e-74 283.5 356 47.2
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 3.4e-74 283.1 344 47.4
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 7.5e-74 282.0 309 49.5
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 2.8e-73 280.0 324 49.7
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.8e-73 280.0 315 50.8
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 4.9e-73 279.3 301 51.8
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 6.3e-73 278.9 314 48.4
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 6.3e-73 278.9 324 50.9
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 8.3e-73 278.5 317 47.9
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 1.8e-72 277.3 340 47.4
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 2.4e-72 276.9 313 47.9
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 4.1e-72 276.2 318 49.7
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 4.1e-72 276.2 351 47.6
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 5.4e-72 275.8 327 51.4
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 3.5e-71 273.1 317 47.9
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 4.5e-71 272.7 337 48.1
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 7.8e-71 271.9 328 49.7
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 3.9e-70 269.6 311 49.2
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.1e-69 268.1 377 42.2
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 9.5e-69 265.0 319 48.3
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 6.8e-67 258.8 321 46.7
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 8.9e-67 258.5 397 42.6
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 5.8e-66 255.8 309 46.9
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 4.1e-64 249.6 286 50.7
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 6.0e-63 245.7 214 58.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 1.0e-62 245.0 372 43.8
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 1.5e-61 241.1 319 44.2
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 5.6e-61 239.2 299 47.8
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 5.6e-61 239.2 263 51.7
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 3.2e-56 223.4 202 55.9
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 4.1e-56 223.0 262 49.2
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 6.0e-55 219.2 242 51.2
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 3.9e-54 216.5 317 42.0
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 1.5e-53 214.5 272 48.5
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 2.1e-52 210.7 366 41.3
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.2e-50 204.9 266 47.4
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.5e-50 204.5 191 56.0
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 8.3e-49 198.7 318 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 6.0e-47 192.6 313 39.6
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 3.9e-46 189.9 190 53.7
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 1.1e-45 188.3 322 35.7
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.5e-37 161.4 200 47.0
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 8.4e-33 145.6 230 40.4
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 7.8e-31 139.0 151 53.0
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 7.6e-26 122.5 331 29.6
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 1.8e-22 111.3 193 38.3
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.6e-20 104.8 197 38.1
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.7e-20 103.6 84 60.7
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 1.4e-19 101.7 97 57.7
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.1e-19 100.5 207 34.8
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 9.0e-19 99.0 201 33.8
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 1.9e-16 91.3 70 58.6
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 2.5e-16 90.9 259 31.7
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 9.3e-16 89.0 63 61.9
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 2.7e-15 87.4 103 45.6
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.1e-14 83.2 120 42.5
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 2.5e-13 80.9 199 32.2
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.8e-11 74.7 110 40.0
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 5.8e-10 69.7 146 36.3


User provided reference genes

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