Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04072 Sapria himalayana HOM05D003531 ORTHO05D004354 3.4e-115 418.3 208 100.0
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.8e-16 89.7 107 50.5
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.8e-16 89.7 132 43.2
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.8e-16 89.7 109 48.6
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.8e-16 89.7 109 48.6
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 3.6e-16 89.4 148 39.9
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 4.8e-16 89.0 107 49.5
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 4.8e-16 89.0 107 49.5
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 8.1e-16 88.2 115 49.6
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 1.2e-14 84.3 114 47.4
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 5.8e-14 82.0 122 45.9
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 7.6e-14 81.6 113 46.9
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 2.2e-13 80.1 118 42.4
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 2.9e-13 79.7 110 44.5
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 3.8e-13 79.3 112 44.6
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 1.1e-12 77.8 111 46.8
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.4e-12 77.4 114 44.7
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 3.2e-12 76.3 111 41.4
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 3.2e-12 76.3 126 43.7
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 4.2e-12 75.9 123 37.4
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 9.3e-12 74.7 149 38.3
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 2.1e-11 73.6 113 40.7
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 4.6e-11 72.4 184 36.4
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 6.0e-11 72.0 112 42.9
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 1.0e-10 71.2 111 42.3
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 1.0e-10 71.2 112 37.5
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.0e-10 71.2 139 36.7
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 1.3e-10 70.9 116 42.2
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.3e-10 70.9 127 38.6
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 1.3e-10 70.9 128 38.3
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 1.8e-10 70.5 119 43.7
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 3.0e-10 69.7 129 39.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.5e-09 67.4 114 39.5
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 3.3e-09 66.2 118 39.0
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 4.3e-09 65.9 115 38.3
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 5.6e-09 65.5 120 39.2
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 7.4e-09 65.1 126 38.9
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 9.6e-09 64.7 58 58.6
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 1.3e-08 64.3 120 38.3
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 1.3e-08 64.3 54 57.4
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 2.1e-08 63.5 56 55.4
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 2.8e-08 63.2 129 38.8
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 2.8e-08 63.2 129 38.8
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 2.8e-08 63.2 119 37.8
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 2.8e-08 63.2 119 37.0
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.7e-08 62.8 124 34.7
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 4.8e-08 62.4 116 38.8
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.8e-08 62.4 122 36.9
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 6.2e-08 62.0 106 36.8
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 8.1e-08 61.6 120 38.3
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.1e-07 61.2 123 39.8
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 1.1e-07 61.2 56 55.4
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 1.4e-07 60.8 111 34.2
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.4e-07 60.8 108 36.1
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.4e-07 60.8 110 35.5
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 2.4e-07 60.1 120 40.0
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 2.4e-07 60.1 66 53.0
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 3.1e-07 59.7 120 35.8
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 3.1e-07 59.7 66 53.0
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 5.3e-07 58.9 120 36.7
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 5.3e-07 58.9 106 40.6
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 6.9e-07 58.5 107 41.1
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 6.9e-07 58.5 107 41.1
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 6.9e-07 58.5 94 38.3
AL4G45755 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 1.5e-06 57.4 59 52.5
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 1.5e-06 57.4 104 34.6
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 2.0e-06 57.0 120 36.7
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.0e-06 57.0 120 36.7
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.6e-06 56.6 62 51.6
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.4e-06 56.2 58 51.7
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 4.5e-06 55.8 113 38.9
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.5e-06 55.8 115 35.7
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 5.8e-06 55.5 58 48.3
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 7.6e-06 55.1 59 50.8


User provided reference genes

Program Settings