Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04011 Sapria himalayana HOM05D003550 ORTHO05D004336 2.9e-66 255.0 119 100.0
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 9.3e-33 143.7 121 59.5
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 1.6e-32 142.9 118 60.2
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 4.6e-32 141.4 118 60.2
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 1.3e-31 139.8 118 55.9
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 1.8e-31 139.4 118 57.6
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.3e-31 139.0 118 57.6
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 5.1e-31 137.9 118 58.5
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 5.1e-31 137.9 118 58.5
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 5.1e-31 137.9 124 58.1
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 8.7e-31 137.1 118 55.9
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 8.7e-31 137.1 118 55.9
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.1e-30 136.7 118 57.6
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 1.1e-30 136.7 118 55.9
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 1.1e-30 136.7 119 55.5
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 1.1e-30 136.7 119 55.5
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 1.1e-30 136.7 118 55.9
Cpa.g.sc169.51 Carica papaya HOM05D003550 ORTHO05D004336 1.1e-30 136.7 117 58.1
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 1.1e-30 136.7 118 55.9
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 55.9
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 56.8
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 56.8
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 55.9
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.5e-30 136.3 122 57.4
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 54.2
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 58.5
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 1.5e-30 136.3 118 58.5
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.9e-30 136.0 120 55.0
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.9e-30 136.0 117 54.7
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 3.3e-30 135.2 119 57.1
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 4.3e-30 134.8 118 56.8
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 4.3e-30 134.8 118 57.6
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 4.3e-30 134.8 119 57.1
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 5.7e-30 134.4 118 56.8
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 5.7e-30 134.4 118 56.8
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 5.7e-30 134.4 118 57.6
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 5.7e-30 134.4 118 57.6
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 5.7e-30 134.4 118 56.8
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 7.4e-30 134.0 121 57.0
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 9.6e-30 133.7 118 54.2
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 9.6e-30 133.7 123 53.7
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 1.3e-29 133.3 118 55.1
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 1.6e-29 132.9 112 56.2
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 1.6e-29 132.9 118 54.2
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 2.1e-29 132.5 118 56.8
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.1e-29 132.5 120 52.5
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.1e-29 132.5 120 52.5
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.1e-29 132.5 120 52.5
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 56.8
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 55.1
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 56.8
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 55.1
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 57.6
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 2.8e-29 132.1 121 54.5
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 2.8e-29 132.1 118 55.1
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 4.8e-29 131.3 118 55.9
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 4.8e-29 131.3 127 49.6
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 4.8e-29 131.3 127 49.6
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.8e-29 131.3 116 56.0
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 6.2e-29 131.0 121 52.1
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 6.2e-29 131.0 118 55.9
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 8.2e-29 130.6 118 54.2
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.1e-28 130.2 118 55.1
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 1.1e-28 130.2 118 55.1
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.1e-28 130.2 115 57.4
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.1e-28 130.2 117 54.7
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.1e-28 130.2 117 54.7
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 57.6
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 55.1
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 55.1
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 56.8
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 55.1
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 1.8e-28 129.4 118 55.9
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 2.4e-28 129.0 118 54.2
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.4e-28 129.0 115 57.4
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.1e-28 128.6 117 53.8
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 3.1e-28 128.6 118 55.9
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 3.1e-28 128.6 118 55.1
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 4.1e-28 128.3 118 55.1
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 4.1e-28 128.3 112 55.4
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 4.1e-28 128.3 118 54.2
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 4.1e-28 128.3 118 54.2
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 6.9e-28 127.5 118 55.1
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 6.9e-28 127.5 118 55.9
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 1.2e-27 126.7 117 54.7
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 1.2e-27 126.7 118 55.9
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 1.2e-27 126.7 118 55.9
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 1.2e-27 126.7 118 53.4
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 1.5e-27 126.3 118 55.1
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 2.0e-27 125.9 118 54.2
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 2.0e-27 125.9 118 54.2
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 2.0e-27 125.9 118 54.2
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.6e-27 125.6 121 52.9
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.6e-27 125.6 117 54.7
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 3.4e-27 125.2 118 53.4
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 4.5e-27 124.8 117 54.7
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 5.8e-27 124.4 114 55.3
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 7.6e-27 124.0 120 52.5
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 1.0e-26 123.6 118 55.9
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 1.0e-26 123.6 118 54.2
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 1.7e-26 122.9 112 53.6
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 1.7e-26 122.9 118 51.7
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 1.7e-26 122.9 118 50.8
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 1.7e-26 122.9 118 52.5
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 1.7e-26 122.9 117 53.0
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.2e-26 122.5 118 53.4
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.2e-26 122.5 118 53.4
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 2.2e-26 122.5 80 67.5
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 2.9e-26 122.1 118 53.4
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 2.9e-26 122.1 115 53.0
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 5.0e-26 121.3 117 52.1
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 6.5e-26 120.9 118 52.5
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 8.4e-26 120.6 118 50.8
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 1.1e-25 120.2 118 51.7
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 1.4e-25 119.8 119 54.6
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.9e-25 119.4 121 50.4
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 4.2e-25 118.2 122 50.8
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 4.2e-25 118.2 118 50.0
Lj9C657G2 Lonicera japonica HOM05D003550 ORTHO05D004336 7.2e-25 117.5 110 54.5
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 9.3e-25 117.1 119 48.7
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 1.8e-23 112.8 117 48.7
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 3.9e-23 111.7 118 50.8
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 5.1e-23 111.3 119 47.9
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 8.7e-23 110.5 118 50.0
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 8.7e-23 110.5 117 47.9
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.9e-22 109.4 127 45.7
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 7.4e-22 107.5 118 50.8
arahy.Tifrunner.gnm1.ann1.S4G3U6 Arachis hypogaea HOM05D003550 ORTHO05D004336 9.7e-22 107.1 85 56.5
Glyma.15G233001 Glycine max HOM05D003550 ORTHO05D004336 1.6e-21 106.3 118 44.9
HanXRQChr15g0481021 Helianthus annuus HOM05D003550 ORTHO05D004336 6.3e-21 104.4 84 57.1
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 2.4e-20 102.4 82 57.3
arahy.Tifrunner.gnm1.ann1.2K1FXD Arachis hypogaea HOM05D003550 ORTHO05D004336 1.1e-17 93.6 84 50.0
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 4.6e-16 88.2 124 41.9
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 7.9e-16 87.4 78 51.3
BolC2t06569H Brassica oleracea HOM05D003550 ORTHO05D004336 1.8e-12 76.3 74 47.3
Glyma.15G233567 Glycine max HOM05D003550 ORTHO05D004336 5.3e-12 74.7 69 47.8
arahy.Tifrunner.gnm1.ann1.SS96TB Arachis hypogaea HOM05D003550 ORTHO05D004336 7.7e-11 70.9 100 44.0
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 1.2e-08 63.5 47 66.0
arahy.Tifrunner.gnm1.ann1.8B1C3X Arachis hypogaea HOM05D003550 ORTHO05D004336 4.7e-08 61.6 51 58.8
BcaB01g02474 Brassica carinata HOM05D003550 ORTHO05D004336 5.1e-07 58.2 76 36.8
arahy.Tifrunner.gnm1.ann1.ZL62QC Arachis hypogaea HOM05D003550 ORTHO05D004336 4.4e-06 55.1 63 44.4


User provided reference genes

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