Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.2e-102 375.6 183 100.0
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 4.0e-51 205.3 160 64.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.8e-50 201.4 163 64.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.8e-50 201.4 160 65.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 7.6e-50 201.1 161 64.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.3e-49 200.3 160 64.4
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.2e-49 199.5 160 64.4
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.9e-49 198.4 157 63.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.9e-49 198.4 170 61.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 6.4e-49 198.0 161 62.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.4e-48 196.8 161 62.1
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.4e-48 196.8 157 65.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 7.1e-48 194.5 154 65.6
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 9.2e-48 194.1 157 60.5
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 9.2e-48 194.1 157 65.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.6e-47 193.4 161 62.1
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.1e-47 193.0 159 62.9
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.1e-47 193.0 176 58.0
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.7e-47 192.6 162 62.3
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.5e-47 192.2 186 57.5
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 6.0e-47 191.4 160 63.1
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.3e-46 190.3 167 59.9
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.3e-46 190.3 162 61.1
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.3e-46 190.3 162 61.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.0e-46 189.1 163 61.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 3.9e-46 188.7 151 64.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.9e-46 188.7 162 58.0
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.1e-46 188.3 185 54.1
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 5.1e-46 188.3 166 59.0
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 5.1e-46 188.3 160 62.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 8.7e-46 187.6 177 58.2
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 8.7e-46 187.6 165 57.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-45 187.2 166 58.4
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-45 187.2 166 58.4
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.1e-45 187.2 162 59.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.5e-45 186.8 161 61.5
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.5e-45 186.8 161 60.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-45 186.8 153 64.7
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.9e-45 186.4 171 57.9
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 2.5e-45 186.0 160 61.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.5e-45 186.0 157 59.2
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.5e-45 186.0 157 59.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.3e-45 185.7 177 57.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.6e-45 184.9 162 57.4
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 5.6e-45 184.9 161 60.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 5.6e-45 184.9 156 60.9
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 5.6e-45 184.9 159 61.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 7.3e-45 184.5 157 58.6
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.3e-45 184.5 160 61.2
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 9.6e-45 184.1 163 57.7
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-44 183.7 162 58.6
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.1e-44 183.0 161 59.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.1e-44 183.0 162 59.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.1e-44 183.0 159 61.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.1e-44 183.0 163 59.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.8e-44 182.6 162 59.9
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.6e-44 182.2 167 55.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.6e-44 182.2 162 57.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.7e-44 181.8 161 57.1
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 4.7e-44 181.8 157 57.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.7e-44 181.8 163 56.4
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 6.2e-44 181.4 154 60.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.1e-43 180.6 160 61.2
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.1e-43 180.6 152 59.2
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.4e-43 180.3 161 57.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.8e-43 179.9 162 57.4
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.4e-43 179.5 156 57.7
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.4e-43 179.5 156 57.7
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.1e-43 179.1 166 56.0
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.1e-43 179.1 158 55.7
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.1e-43 179.1 163 54.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.0e-43 178.7 158 57.6
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 5.2e-43 178.3 160 58.1
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.9e-43 177.9 160 57.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 6.9e-43 177.9 163 55.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.0e-43 177.6 153 60.8
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.2e-42 177.2 155 59.4
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.2e-42 177.2 153 59.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 3.4e-42 175.6 181 56.4
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 7.6e-42 174.5 149 59.7
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 8.4e-41 171.0 165 55.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.9e-40 169.9 165 53.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.4e-40 169.5 154 55.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.1e-39 166.4 165 53.3
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.5e-39 165.6 165 50.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.7e-38 163.3 158 53.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.1e-38 161.8 116 69.0
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.7e-38 161.0 163 53.4
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.3e-37 159.1 160 51.2
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 4.3e-37 158.7 175 52.6
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.3e-37 157.9 156 52.6
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 9.6e-37 157.5 178 49.4
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.6e-36 156.8 159 52.8
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.1e-36 156.4 162 52.5
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.6e-36 155.6 160 50.6
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-36 155.6 157 52.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-36 155.6 160 51.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 4.8e-36 155.2 259 39.4
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 6.2e-36 154.8 150 52.0
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.4e-35 153.7 152 52.0
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 3.1e-35 152.5 160 50.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 3.1e-35 152.5 162 50.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.3e-35 151.8 119 64.7
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.3e-35 151.8 158 53.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 5.3e-35 151.8 152 51.3
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 4.5e-34 148.7 160 48.8
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.5e-34 148.7 160 48.8
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.5e-34 148.7 165 49.7
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.5e-34 148.7 156 52.6
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 9.9e-34 147.5 160 48.8
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-33 146.7 230 40.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 2.9e-33 146.0 160 48.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.9e-33 146.0 161 49.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 4.9e-33 145.2 159 50.9
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 6.4e-33 144.8 159 50.3
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 8.4e-33 144.4 155 49.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.4e-33 144.4 158 48.7
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.4e-33 144.4 158 48.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.4e-32 143.7 128 58.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.9e-32 143.3 162 47.5
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.4e-32 141.7 149 51.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.3e-32 141.0 156 52.6
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 6.0e-31 138.3 159 48.4
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.1e-29 134.0 153 49.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 8.1e-28 127.9 154 46.1
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.8e-26 121.7 161 42.2
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.8e-25 119.0 161 41.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 4.2e-24 115.5 107 50.5
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.2e-24 115.5 156 43.6
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 5.5e-24 115.2 114 55.3
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.2e-23 114.0 95 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.3e-22 110.5 95 52.6
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.5e-21 107.1 146 39.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 3.3e-21 105.9 113 49.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 8.2e-20 101.3 95 51.6
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.8e-19 100.1 106 52.8
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.0e-18 96.7 151 43.0
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.6e-18 96.3 83 54.2
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 5.8e-18 95.1 64 73.4
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.0e-17 94.4 72 69.4
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.9e-17 92.8 83 49.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-17 92.8 120 46.7
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-17 91.7 62 72.6
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.4e-17 91.3 102 52.0
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.6e-15 85.5 114 45.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.8e-14 83.6 114 43.9
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.6e-12 77.0 63 57.1
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 9.0e-11 71.2 63 54.0
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 7.7e-10 68.2 63 52.4
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 3.8e-09 65.9 80 46.2
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 1.4e-08 63.9 45 66.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.2e-08 62.4 44 63.6
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 9.4e-08 61.2 62 51.6
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.7e-07 59.7 52 61.5
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.9e-07 58.2 67 50.7
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.8e-06 54.7 97 42.3


User provided reference genes

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