Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 2308.1 1173 100.0
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1816.6 1168 78.5
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1790.8 1167 77.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1789.2 1171 77.3
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1783.8 1174 77.3
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1781.1 1173 77.1
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1778.8 1172 77.0
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1776.9 1168 76.1
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1776.9 1167 77.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1775.4 1173 76.8
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1774.6 1169 76.4
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1772.7 1174 76.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1772.7 1170 76.9
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1771.5 1171 76.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1771.1 1167 77.0
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1768.1 1174 76.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1765.4 1169 75.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1167 76.9
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1164 77.0
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1764.2 1168 75.9
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1763.0 1171 76.4
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1763.0 1168 75.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1762.7 1176 76.0
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1760.7 1168 76.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1760.3 1176 76.0
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1760.0 1170 76.3
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1760.0 1168 75.6
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1760.0 1168 75.7
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1759.2 1172 76.2
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1758.8 1168 75.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1758.4 1170 75.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1758.0 1175 75.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1756.5 1175 76.1
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1756.1 1173 76.0
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1755.0 1172 75.9
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1754.6 1172 75.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1754.6 1176 75.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1753.4 1167 75.9
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1752.6 1168 75.4
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1751.9 1168 75.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1749.6 1173 75.8
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1749.2 1166 75.9
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1749.2 1167 76.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1743.8 1168 75.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1741.5 1172 74.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1739.9 1167 75.1
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1737.2 1178 74.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1736.1 1170 75.4
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1735.7 1168 74.8
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1735.3 1172 74.7
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1735.3 1168 74.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1731.8 1170 74.6
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1728.4 1166 75.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1727.6 1181 74.0
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1727.2 1204 73.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1725.3 1170 74.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1725.3 1095 78.5
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1724.5 1169 74.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1721.8 1201 73.4
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1721.4 1215 72.0
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1718.4 1168 74.3
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1717.6 1168 74.1
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1717.6 1178 73.9
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1717.6 1168 74.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1717.2 1170 73.7
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1717.2 1172 74.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1714.5 1179 73.8
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1713.7 1172 74.1
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1713.0 1179 73.5
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1712.6 1167 74.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1712.6 1166 74.4
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1712.2 1168 74.1
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1711.8 1179 73.5
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1708.7 1170 74.2
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1708.7 1170 74.2
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1708.0 1179 73.5
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1706.8 1167 74.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1701.4 1190 72.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1701.4 1173 74.2
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1696.8 1169 73.1
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1694.1 1172 74.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1693.7 1168 74.5
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1692.2 1168 72.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1691.4 1103 76.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1690.2 1159 74.2
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1686.4 1211 71.2
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1675.2 1102 75.3
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1660.2 1182 72.5
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1647.5 1169 71.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1637.5 1184 70.2
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1632.1 1196 71.1
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1621.7 1333 64.8
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1598.9 1166 69.0
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1583.5 1071 75.3
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1559.7 1173 67.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1505.3 1166 65.3
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1502.3 1166 65.2
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1468.8 1156 67.7
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 998 74.2
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1414.1 944 75.2
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1374.4 1180 60.6
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1370.9 1163 60.8
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1354.3 848 80.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1337.4 839 80.1
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1310.8 1164 59.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1310.4 1163 59.0
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1288.1 1181 57.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1237.6 800 77.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1201.4 798 75.7
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1113.2 789 70.8
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 5.0e-304 1048.1 925 58.7
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 1.8e-301 1039.6 696 76.4
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 6.7e-293 1011.1 1199 46.5
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.9e-264 915.6 577 80.6
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.5e-263 913.7 656 69.5
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.4e-258 897.1 744 65.6
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.6e-257 892.1 600 77.0
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.3e-255 884.8 545 82.0
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.0e-236 823.5 592 69.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 9.0e-229 798.1 631 65.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.9e-227 792.3 523 73.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 5.9e-204 715.7 465 75.9
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 9.4e-186 655.2 485 67.6
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.5e-178 631.3 404 75.5
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.6e-140 505.0 357 72.5
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.4e-127 460.7 354 65.8
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.2e-111 409.1 377 55.2
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.0e-94 352.8 276 65.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 7.7e-79 300.1 195 76.4
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 4.5e-55 221.1 168 69.0
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.5e-42 179.5 143 65.0
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.3e-38 166.4 129 67.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.1e-35 155.2 104 75.0
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.5e-34 152.9 110 70.9
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 5.0e-30 137.9 78 79.5
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 7.3e-29 134.0 87 73.6
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 9.5e-29 133.7 96 71.9
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.1e-16 91.7 131 41.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.1e-16 91.7 131 41.2
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.5e-13 83.2 96 52.1
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.4e-11 76.6 51 72.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.2e-11 74.7 51 70.6
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 5.2e-11 74.7 51 72.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 9.2e-08 63.9 99 45.5
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 1.2e-07 63.5 57 61.4


User provided reference genes

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