Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.2e-94 349.7 171 100.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 5.8e-20 101.7 282 31.2
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.0e-19 100.9 277 31.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 2.2e-19 99.8 275 31.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.9e-19 99.4 243 33.3
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.9e-19 98.6 277 31.8
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 4.9e-19 98.6 277 31.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 8.4e-19 97.8 270 32.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 1.4e-18 97.1 272 32.0
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.9e-18 96.7 275 31.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.9e-18 96.7 279 31.5
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.9e-18 96.7 275 31.3
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 1.9e-18 96.7 275 31.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 3.2e-18 95.9 275 31.3
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.2e-18 95.5 276 31.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.5e-18 95.1 278 30.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 7.1e-18 94.7 279 31.9
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 9.3e-18 94.4 276 31.5
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.2e-17 94.0 279 31.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-17 94.0 279 31.2
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 1.2e-17 94.0 279 31.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 1.2e-17 94.0 279 32.3
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 1.2e-17 94.0 283 31.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 1.2e-17 94.0 276 30.8
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 1.2e-17 94.0 282 30.9
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.2e-17 94.0 277 29.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 3.5e-17 92.4 279 30.5
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 3.5e-17 92.4 279 30.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 6.0e-17 91.7 275 32.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.0e-17 91.7 275 32.0
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 6.0e-17 91.7 281 28.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 7.9e-17 91.3 288 29.9
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 7.9e-17 91.3 273 32.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 7.9e-17 91.3 275 31.6
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 1.0e-16 90.9 275 31.6
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.0e-16 90.9 275 29.5
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.3e-16 90.5 279 29.7
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.8e-16 90.1 279 30.1
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.8e-16 90.1 280 29.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.8e-16 90.1 279 30.1
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.8e-16 90.1 282 30.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.8e-16 90.1 283 30.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.0e-16 89.4 275 31.6
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.0e-16 89.4 275 31.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 3.0e-16 89.4 281 28.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 3.9e-16 89.0 284 30.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 5.1e-16 88.6 275 31.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 6.7e-16 88.2 279 30.5
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 6.7e-16 88.2 279 30.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 8.7e-16 87.8 275 29.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.1e-15 87.4 267 30.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.5e-15 87.0 284 29.6
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.9e-15 86.7 267 30.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 1.9e-15 86.7 275 31.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.5e-15 86.3 276 31.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.3e-15 85.5 283 30.4
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 5.7e-15 85.1 268 29.5
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 7.4e-15 84.7 94 52.1
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 9.6e-15 84.3 275 30.9
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 9.6e-15 84.3 281 28.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.3e-14 84.0 75 58.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.6e-14 83.6 57 64.9
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.1e-14 83.2 96 53.1
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 2.1e-14 83.2 275 30.5
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 2.8e-14 82.8 96 50.0
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.8e-14 82.8 91 52.7
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.7e-14 82.4 90 52.2
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 3.7e-14 82.4 94 51.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 3.7e-14 82.4 283 29.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 6.2e-14 81.6 98 49.0
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.2e-14 81.6 107 43.9
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 8.2e-14 81.3 90 50.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.1e-13 80.9 90 51.1
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.1e-13 80.9 107 43.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.4e-13 80.5 87 51.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.4e-13 80.5 90 51.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.4e-13 80.5 291 27.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-13 80.5 90 50.0
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.8e-13 80.1 292 27.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.8e-13 80.1 86 48.8
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.8e-13 80.1 271 29.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 2.4e-13 79.7 275 28.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 3.1e-13 79.3 88 51.1
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 3.1e-13 79.3 57 63.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 4.1e-13 79.0 277 28.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.1e-13 79.0 98 48.0
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-13 79.0 86 47.7
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 5.3e-13 78.6 88 51.1
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 5.3e-13 78.6 266 30.5
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 6.9e-13 78.2 276 28.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 9.0e-13 77.8 98 48.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.2e-12 77.4 98 46.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.5e-12 77.0 280 28.2
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.6e-12 76.3 276 28.6
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.4e-12 75.9 98 45.9
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 5.8e-12 75.1 99 45.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 7.6e-12 74.7 97 46.4
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.6e-12 74.7 105 42.9
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 7.6e-12 74.7 90 47.8
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 7.6e-12 74.7 90 47.8
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.0e-11 74.3 93 47.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.0e-11 74.3 91 46.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 1.0e-11 74.3 90 48.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 1.3e-11 73.9 90 47.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.2e-11 73.2 46 71.7
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.2e-11 73.2 90 47.8
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 3.8e-11 72.4 58 60.3
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 5.0e-11 72.0 90 47.8
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 5.0e-11 72.0 57 56.1
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.9e-10 70.1 99 41.4
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.9e-10 70.1 54 55.6
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.2e-10 69.3 86 47.7
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.2e-10 69.3 57 56.1
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.2e-10 69.3 54 55.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.2e-10 68.9 50 58.0
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 5.5e-10 68.6 98 43.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 5.5e-10 68.6 281 27.0
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 7.1e-10 68.2 263 27.8
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 9.3e-10 67.8 92 43.5
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 2.1e-09 66.6 86 46.5
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 6.1e-09 65.1 98 42.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.3e-08 63.9 52 53.8
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 6.7e-08 61.6 46 60.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 8.7e-08 61.2 52 53.8
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.1e-07 60.8 98 38.8
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.1e-07 60.8 84 41.7
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.8e-06 56.2 64 46.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 4.8e-06 55.5 64 45.3


User provided reference genes

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