Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 8.4e-82 307.0 157 100.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.9e-34 149.1 191 45.0
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.9e-34 149.1 191 45.0
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.5e-34 147.5 189 45.0
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 5.5e-33 144.8 189 44.4
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 5.5e-33 144.8 189 44.4
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-32 142.5 167 46.1
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.0e-31 140.6 189 45.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 5.2e-31 138.3 188 44.7
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-30 137.1 187 43.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 9.7e-30 134.0 188 43.1
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 4.8e-29 131.7 186 43.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-28 129.0 125 54.4
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-28 129.0 125 54.4
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-28 129.0 125 54.4
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 7.0e-28 127.9 190 43.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.6e-27 126.7 190 43.2
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.7e-27 125.9 90 66.7
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 4.5e-27 125.2 91 67.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 5.9e-27 124.8 209 38.8
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 5.9e-27 124.8 91 67.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.0e-26 124.0 234 35.9
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-26 123.2 91 65.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.2e-26 122.9 189 41.3
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.9e-25 119.8 91 65.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.2e-25 118.6 91 64.8
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 5.5e-25 118.2 91 64.8
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 5.5e-25 118.2 91 63.7
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 9.4e-25 117.5 91 64.8
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 9.4e-25 117.5 81 70.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.6e-24 116.7 91 63.7
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.6e-24 116.7 90 63.3
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 4.7e-24 115.2 91 64.8
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 8.0e-24 114.4 91 62.6
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 8.0e-24 114.4 91 62.6
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-23 113.6 91 62.6
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-23 113.6 91 62.6
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-23 113.2 91 61.5
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-23 113.2 209 37.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.8e-23 113.2 91 61.5
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.8e-23 113.2 91 61.5
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-23 112.8 74 73.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 3.0e-23 112.5 91 61.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.0e-23 112.5 91 62.6
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 3.0e-23 112.5 91 62.6
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 3.0e-23 112.5 91 62.6
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 3.0e-23 112.5 91 62.6
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.0e-23 112.1 91 61.5
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.0e-23 112.1 124 50.8
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.0e-23 112.1 81 66.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.0e-22 109.8 91 60.4
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.6e-22 109.4 91 59.3
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.4e-22 109.0 91 59.3
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 7.5e-22 107.8 91 59.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.7e-21 106.7 91 59.3
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.8e-21 105.9 91 61.5
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.8e-21 105.9 91 61.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.8e-20 103.2 89 56.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-20 102.4 81 61.7
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.1e-20 102.1 85 60.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-20 102.1 80 61.2
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 7.0e-20 101.3 73 67.1
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 4.5e-19 98.6 77 63.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.8e-18 95.5 75 61.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 6.8e-15 84.7 53 71.7
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-13 80.5 64 60.9
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-12 77.0 56 62.5
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 4.1e-12 75.5 49 71.4
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 7.0e-12 74.7 57 64.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.2e-08 63.9 195 26.2
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 1.6e-08 63.5 55 56.4
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 3.6e-08 62.4 45 66.7
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.1e-08 61.6 75 44.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 6.1e-08 61.6 75 44.0
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.0e-08 61.2 55 54.5
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.8e-07 60.1 54 55.6
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-07 59.7 45 62.2
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-07 59.3 43 60.5
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-06 57.0 45 64.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-06 56.2 53 49.1
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.4e-06 55.8 54 53.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 4.4e-06 55.5 54 50.0
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 4.4e-06 55.5 54 50.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 4.4e-06 55.5 54 51.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.4e-06 55.5 54 50.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 5.8e-06 55.1 54 53.7
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 7.5e-06 54.7 54 51.9
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.8e-06 54.3 54 51.9


User provided reference genes

Program Settings