Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 7.8e-52 207.2 135 100.0
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 4.6e-20 101.7 102 55.9
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.0e-19 99.0 102 70.6
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 3.0e-19 99.0 102 54.9
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 9.6e-18 94.0 102 51.0
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 1.3e-17 93.6 100 50.0
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 4.8e-17 91.7 102 49.0
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 6.2e-17 91.3 95 69.5
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.1e-16 90.5 102 49.0
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 4.0e-16 88.6 82 57.3
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 9.0e-16 87.4 102 64.7
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 9.0e-16 87.4 83 55.4
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 9.0e-16 87.4 81 56.8
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 2.0e-15 86.3 80 57.5
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-15 86.3 92 71.7
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 2.6e-15 85.9 82 76.8
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.4e-15 85.5 91 71.4
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.4e-15 85.5 91 71.4
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 9.9e-15 84.0 83 50.6
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.3e-14 83.6 83 49.4
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.7e-14 83.2 93 57.0
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 2.2e-14 82.8 83 50.6
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.2e-14 82.8 83 50.6
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 2.2e-14 82.8 83 50.6
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.2e-14 82.8 83 50.6
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 2.2e-14 82.8 83 50.6
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 2.9e-14 82.4 82 73.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.8e-14 82.0 83 49.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.8e-14 82.0 83 49.4
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.8e-14 82.0 82 51.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 4.9e-14 81.6 82 50.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 4.9e-14 81.6 82 50.0
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 4.9e-14 81.6 93 48.4
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 8.4e-14 80.9 102 52.9
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 8.4e-14 80.9 94 67.0
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 1.1e-13 80.5 94 70.2
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.4e-13 80.1 93 48.4
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.4e-13 80.1 94 71.3
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 1.9e-13 79.7 102 56.9
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.9e-13 79.7 45 84.4
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.9e-13 79.7 45 84.4
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 1.9e-13 79.7 105 57.1
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 2.4e-13 79.3 94 71.3
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 2.4e-13 79.3 91 47.3
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 3.2e-13 79.0 94 63.8
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 4.2e-13 78.6 49 79.6
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.2e-13 78.6 94 67.0
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 5.5e-13 78.2 44 84.1
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 7.1e-13 77.8 82 73.2
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 7.1e-13 77.8 45 82.2
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.1e-13 77.8 42 88.1
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 9.3e-13 77.4 92 66.3
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 1.2e-12 77.0 45 80.0
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 2.1e-12 76.3 98 54.1
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 2.1e-12 76.3 96 44.8
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 3.5e-12 75.5 45 80.0
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 3.5e-12 75.5 43 81.4
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 3.5e-12 75.5 42 83.3
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 7.9e-12 74.3 45 73.3
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 7.9e-12 74.3 45 73.3
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 7.9e-12 74.3 45 73.3
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 7.9e-12 74.3 45 73.3
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 7.9e-12 74.3 45 73.3
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 1.0e-11 73.9 43 83.7
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.8e-11 73.2 45 71.1
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.8e-11 73.2 45 71.1
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.0e-11 72.4 42 83.3
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.0e-11 72.4 42 83.3
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.0e-11 72.4 45 75.6
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 3.0e-11 72.4 44 70.5
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 3.0e-11 72.4 40 87.5
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 3.9e-11 72.0 95 45.3
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.1e-11 71.6 76 75.0
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 8.7e-11 70.9 44 77.3
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 8.7e-11 70.9 44 77.3
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 8.7e-11 70.9 102 54.9
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 1.1e-10 70.5 44 75.0
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-10 70.5 44 75.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-10 70.5 44 75.0
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.5e-10 70.1 42 78.6
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.5e-10 70.1 42 78.6
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.9e-10 69.7 40 82.5
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 1.9e-10 69.7 42 78.6
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.9e-10 69.7 45 68.9
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.9e-10 69.7 44 75.0
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 2.5e-10 69.3 42 76.2
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-10 69.3 42 76.2
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-10 69.3 42 76.2
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 2.5e-10 69.3 102 59.8
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 3.3e-10 68.9 109 38.5
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 3.3e-10 68.9 109 38.5
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 3.3e-10 68.9 45 68.9
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 3.3e-10 68.9 82 75.6
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 4.3e-10 68.6 41 78.0
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 4.3e-10 68.6 41 78.0
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 4.3e-10 68.6 41 78.0
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 5.6e-10 68.2 39 87.2
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 5.6e-10 68.2 42 73.8
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 7.4e-10 67.8 45 68.9
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.4e-10 67.8 45 71.1
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 9.6e-10 67.4 42 76.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 1.6e-09 66.6 45 71.1
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 2.1e-09 66.2 38 81.6
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 2.8e-09 65.9 46 60.9
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 4.8e-09 65.1 41 78.0
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 6.2e-09 64.7 43 72.1
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.2e-09 64.3 99 42.4
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 1.8e-08 63.2 48 68.8
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.4e-08 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.4e-08 62.8 39 76.9
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 5.3e-08 61.6 43 67.4
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-08 61.2 42 71.4
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 6.9e-08 61.2 40 72.5
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.2e-07 60.5 35 80.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.0e-07 59.7 70 48.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 2.0e-07 59.7 37 78.4
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 2.0e-07 59.7 74 67.6
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 4.5e-07 58.5 45 60.0
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.0e-06 57.4 37 78.4
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-06 56.2 99 56.6
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 3.8e-06 55.5 41 73.2
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 4.9e-06 55.1 40 65.0
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 6.5e-06 54.7 41 65.9


User provided reference genes

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