Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 2.2e-148 528.9 257 100.0
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.9e-39 165.6 147 57.1
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 4.2e-38 162.5 151 57.0
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 5.5e-38 162.2 150 58.7
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 6.0e-37 158.7 147 57.1
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.3e-36 157.5 146 58.2
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.0e-36 156.4 155 52.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.0e-36 156.4 149 54.4
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 5.1e-36 155.6 140 55.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 6.7e-36 155.2 149 53.0
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.7e-36 155.2 150 56.0
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 6.7e-36 155.2 155 54.2
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.1e-35 154.5 147 55.1
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.5e-35 154.1 150 56.7
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.5e-35 154.1 150 56.7
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.9e-35 153.7 146 54.1
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.7e-34 149.4 146 55.5
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 6.3e-34 148.7 151 53.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 8.2e-34 148.3 146 52.7
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.1e-33 147.9 116 59.5
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.4e-33 147.5 149 50.3
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.4e-33 147.5 141 53.9
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 1.4e-33 147.5 148 52.0
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 3.1e-33 146.4 146 50.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 5.3e-33 145.6 141 53.2
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.9e-33 145.2 164 47.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 9.0e-33 144.8 137 54.7
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 9.0e-33 144.8 162 50.0
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 9.0e-33 144.8 146 52.1
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.0e-32 143.7 143 53.1
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.6e-32 143.3 143 52.4
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 2.6e-32 143.3 118 55.9
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.5e-32 142.5 164 46.3
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 5.9e-32 142.1 115 57.4
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 7.6e-32 141.7 146 52.7
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.0e-31 141.4 140 52.1
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.0e-31 141.4 145 51.7
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.3e-31 141.0 146 52.1
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.7e-31 140.6 146 51.4
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.7e-31 140.6 146 49.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.9e-31 139.8 115 57.4
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.9e-31 139.8 165 46.7
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 5.0e-31 139.0 137 51.8
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.0e-31 139.0 153 48.4
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.0e-31 139.0 150 49.3
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 5.0e-31 139.0 115 55.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 5.0e-31 139.0 148 48.0
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 8.5e-31 138.3 150 49.3
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.1e-30 137.9 123 53.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.4e-30 137.5 111 56.8
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.9e-30 137.1 155 48.4
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.9e-30 137.1 132 54.5
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.2e-30 136.3 149 48.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.2e-30 136.3 148 48.6
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 5.5e-30 135.6 143 49.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 5.5e-30 135.6 141 47.5
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 7.2e-30 135.2 132 53.0
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 9.3e-30 134.8 138 49.3
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.3e-30 134.8 139 51.8
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.3e-30 134.8 139 51.8
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.6e-29 134.0 150 47.3
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.1e-29 133.7 154 44.2
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.7e-29 133.3 113 54.0
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.7e-29 133.3 113 54.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.6e-29 132.9 156 47.4
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 4.6e-29 132.5 155 48.4
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.6e-29 132.5 155 46.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 7.9e-29 131.7 149 45.6
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.3e-28 131.0 152 48.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.3e-28 131.0 137 49.6
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.3e-28 131.0 155 45.8
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-28 131.0 139 46.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.8e-28 130.6 141 48.2
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 2.3e-28 130.2 150 46.7
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.3e-28 130.2 126 52.4
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 2.3e-28 130.2 145 48.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.3e-28 130.2 149 47.0
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.0e-28 129.8 146 47.3
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 3.9e-28 129.4 142 48.6
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 5.1e-28 129.0 139 51.1
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 8.7e-28 128.3 155 45.2
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.1e-27 127.9 112 53.6
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.1e-27 127.9 144 49.3
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.5e-27 127.5 131 50.4
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.5e-27 127.5 131 50.4
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.5e-27 127.5 107 55.1
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.5e-27 127.5 111 53.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.5e-27 127.5 128 50.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.5e-27 127.5 128 50.0
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.5e-27 126.7 156 44.2
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.5e-27 126.7 128 50.0
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.5e-27 126.7 149 45.6
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.3e-27 126.3 147 41.5
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 4.3e-27 125.9 137 48.2
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 4.3e-27 125.9 163 44.8
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 4.3e-27 125.9 134 45.5
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.7e-27 125.6 137 48.2
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 9.7e-27 124.8 121 49.6
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.3e-26 124.4 138 47.8
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.6e-26 124.0 135 47.4
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 6.3e-26 122.1 181 42.5
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.8e-25 120.6 133 45.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.5e-24 117.5 106 49.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.5e-24 117.5 156 41.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.0e-24 117.1 164 42.7
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.4e-24 116.3 142 43.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 5.9e-24 115.5 155 43.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.3e-23 114.4 112 48.2
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.2e-22 109.8 75 61.3
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.2e-22 109.4 139 46.8
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.1e-21 107.1 72 66.7
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 5.1e-20 102.4 73 58.9
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 6.7e-20 102.1 74 58.1
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.2e-18 97.1 108 44.4
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.2e-18 95.1 88 51.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 9.1e-17 91.7 81 51.9
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 1.2e-16 91.3 140 41.4
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.0e-16 90.5 84 46.4
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 3.2e-14 83.2 87 50.6
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.7e-13 80.1 57 66.7
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.1e-11 74.7 62 56.5
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 3.3e-11 73.2 39 76.9
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 3.3e-11 73.2 39 76.9
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 5.9e-08 62.4 49 55.1
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 7.7e-08 62.0 116 37.1
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 2.2e-07 60.5 42 59.5
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.5e-06 57.8 102 41.2
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 2.5e-06 57.0 41 65.9
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 3.2e-06 56.6 42 52.4
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 4.2e-06 56.2 30 76.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 5.5e-06 55.8 38 65.8


User provided reference genes

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