Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 3.1e-190 668.3 342 100.0
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.4e-52 211.1 476 35.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.0e-51 207.2 464 35.6
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 4.4e-51 206.1 475 34.7
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 4.4e-51 206.1 475 34.7
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.1e-49 199.9 474 34.8
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.2e-48 198.0 443 35.0
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.6e-48 197.6 456 35.5
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.7e-48 196.8 464 34.7
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.5e-48 196.4 443 34.8
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.9e-48 195.7 454 34.4
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 7.8e-48 195.3 471 34.6
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.0e-47 194.9 457 35.9
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.3e-47 194.5 443 34.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 2.9e-47 193.4 470 34.3
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 2.9e-47 193.4 458 35.2
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 6.6e-47 192.2 460 35.4
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 6.6e-47 192.2 444 34.7
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.6e-47 191.8 436 34.6
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.1e-46 191.4 473 35.3
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.1e-46 191.4 445 34.6
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.5e-46 191.0 451 33.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.9e-46 190.7 442 35.1
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.5e-46 190.3 442 33.7
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 4.3e-46 189.5 435 35.2
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 9.5e-46 188.3 472 33.9
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.5e-46 188.3 470 34.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 9.5e-46 188.3 432 35.0
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.6e-45 187.6 440 34.3
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 2.1e-45 187.2 474 34.4
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.8e-45 186.8 463 33.7
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.8e-45 186.8 445 34.2
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.8e-45 186.8 450 33.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.6e-45 186.4 437 33.6
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.1e-45 185.7 445 34.6
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 8.0e-45 185.3 442 34.6
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.0e-44 184.9 474 34.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.0e-44 184.9 455 33.2
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.4e-44 184.5 459 33.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.8e-44 184.1 362 36.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 4.0e-44 183.0 458 33.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.0e-44 183.0 448 35.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 4.0e-44 183.0 471 34.2
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 4.0e-44 183.0 465 32.0
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 5.2e-44 182.6 454 33.7
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 8.9e-44 181.8 434 34.8
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.2e-43 181.4 487 32.0
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.5e-43 181.0 434 35.0
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.0e-43 180.6 441 33.3
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.6e-43 180.3 466 32.2
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.4e-43 179.9 449 32.7
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.4e-43 179.9 449 33.6
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.5e-43 178.7 449 32.7
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.8e-43 178.3 449 33.4
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.3e-42 177.9 435 34.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.2e-42 177.2 439 33.0
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.2e-42 177.2 448 33.9
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.9e-42 176.8 454 31.9
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 3.7e-42 176.4 447 33.6
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 6.4e-42 175.6 461 33.6
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 8.3e-42 175.3 452 33.2
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.4e-41 173.7 475 31.8
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 4.1e-41 172.9 460 33.3
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.2e-40 171.4 464 33.2
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-40 171.4 466 30.7
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.6e-40 171.0 462 31.0
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.7e-40 170.2 436 33.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.7e-40 170.2 449 32.3
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 3.5e-40 169.9 455 33.6
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.5e-40 169.9 445 32.6
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 6.0e-40 169.1 418 32.3
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.3e-39 167.9 351 36.5
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.0e-39 166.8 428 32.5
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 5.0e-39 166.0 444 32.4
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.5e-38 164.5 477 32.3
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.9e-38 164.1 450 33.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 3.3e-38 163.3 429 33.6
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 5.6e-38 162.5 467 31.0
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 7.3e-38 162.2 427 31.9
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 7.3e-38 162.2 467 31.3
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.2e-37 161.4 442 32.8
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.6e-37 161.0 467 31.0
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.6e-37 159.8 427 32.8
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 4.7e-37 159.5 450 33.3
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 3.1e-36 156.8 428 32.7
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.0e-35 154.1 449 32.3
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.3e-34 151.4 419 30.5
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.9e-34 150.2 439 31.9
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.4e-34 149.1 487 31.8
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.4e-33 147.1 435 30.8
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 3.2e-33 146.7 422 31.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 4.1e-33 146.4 417 30.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 4.1e-33 146.4 417 30.7
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.2e-32 144.8 407 31.0
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.2e-32 144.8 459 30.7
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.6e-32 144.4 443 30.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.1e-32 144.1 420 31.0
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.7e-32 143.7 459 30.9
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.5e-32 143.3 459 30.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 4.6e-32 142.9 420 30.0
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.7e-31 141.0 393 32.3
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 5.1e-31 139.4 419 29.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.5e-30 137.1 457 28.9
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.5e-30 137.1 113 58.4
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 9.5e-30 135.2 448 31.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.6e-29 134.4 426 30.0
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.1e-29 134.0 113 57.5
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 4.0e-28 129.8 437 31.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 5.2e-28 129.4 394 33.2
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.8e-27 125.9 130 51.5
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 9.2e-25 118.6 373 31.6
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 3.5e-24 116.7 468 27.6
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.3e-23 114.0 107 50.5
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 4.3e-22 109.8 468 27.4
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-21 108.2 415 29.2
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.4e-20 104.8 100 53.0
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.8e-20 104.4 196 39.3
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.5e-19 101.3 122 47.5
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 3.8e-18 96.7 166 39.8
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.2e-16 91.7 131 41.2
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.3e-15 87.4 127 37.8
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.6e-15 85.9 304 30.6
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 8.1e-13 79.0 128 44.5
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 1.8e-12 77.8 72 44.4
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 6.9e-12 75.9 128 45.3
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 2.0e-11 74.3 244 29.9
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 2.6e-11 73.9 316 27.2
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 4.4e-11 73.2 93 48.4
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.2e-10 70.9 312 27.2
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.6e-08 64.7 257 32.3
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.3e-07 61.6 82 45.1
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.3e-07 61.6 71 43.7


User provided reference genes

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