Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 3.2e-172 608.2 285 100.0
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.3e-101 372.9 308 58.1
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 3.9e-101 372.1 307 58.3
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 3.3e-100 369.0 308 57.8
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 3.3e-100 369.0 306 57.2
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 5.6e-100 368.2 307 57.0
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 7.3e-100 367.9 307 58.6
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 9.5e-100 367.5 306 56.9
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 9.5e-100 367.5 306 56.9
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 3.6e-99 365.5 307 57.0
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 4.7e-99 365.2 307 58.6
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 4.7e-99 365.2 307 58.6
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 6.2e-99 364.8 307 56.4
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 6.2e-99 364.8 307 57.7
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.0e-99 364.4 306 56.5
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.8e-98 363.2 306 56.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 2.3e-98 362.8 307 58.0
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 2.3e-98 362.8 307 57.0
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 3.1e-98 362.5 307 57.3
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 5.2e-98 361.7 308 56.5
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 6.8e-98 361.3 306 56.9
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 8.9e-98 360.9 306 56.9
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.5e-97 360.1 308 57.5
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.5e-97 360.1 311 54.7
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.5e-97 360.1 307 57.3
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.5e-97 360.1 307 57.3
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.5e-97 360.1 307 57.0
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.0e-97 359.8 307 55.7
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.0e-97 359.8 304 57.6
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.6e-97 359.4 306 57.2
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.4e-97 359.0 306 56.2
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 5.8e-97 358.2 307 55.7
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 9.8e-97 357.5 306 57.5
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.3e-96 357.1 314 56.1
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 2.2e-96 356.3 308 55.8
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 2.2e-96 356.3 308 56.2
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.9e-96 355.9 306 55.6
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 3.7e-96 355.5 309 54.7
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.7e-96 355.5 307 55.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 4.9e-96 355.1 309 55.0
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 6.4e-96 354.8 307 54.4
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.1e-95 354.0 309 56.0
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 1.4e-95 353.6 310 53.5
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.4e-95 353.6 307 56.4
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.4e-95 352.8 307 54.4
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 2.4e-95 352.8 307 55.7
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 3.2e-95 352.4 307 55.4
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.2e-95 352.4 307 55.7
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 4.1e-95 352.1 309 53.7
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 4.1e-95 352.1 306 55.6
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 4.1e-95 352.1 307 56.4
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 4.1e-95 352.1 307 54.7
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 5.4e-95 351.7 307 55.7
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 7.0e-95 351.3 307 55.0
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 7.0e-95 351.3 311 55.0
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 9.2e-95 350.9 310 53.2
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 9.2e-95 350.9 302 57.9
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 9.2e-95 350.9 307 55.4
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.2e-94 350.5 304 56.2
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.2e-94 350.5 311 55.0
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.6e-94 350.1 307 54.1
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 2.7e-94 349.4 307 55.0
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 2.7e-94 349.4 308 55.8
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 2.7e-94 349.4 307 54.7
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.5e-94 349.0 309 54.7
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 3.5e-94 349.0 312 55.1
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.6e-94 348.6 307 55.7
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 4.6e-94 348.6 307 54.7
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 6.0e-94 348.2 308 56.5
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 6.0e-94 348.2 306 55.6
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.8e-94 347.8 314 54.5
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 7.8e-94 347.8 307 54.4
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.7e-93 346.7 311 53.7
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.7e-93 346.7 308 54.9
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.3e-93 346.3 306 54.6
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.3e-93 346.3 308 55.2
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 3.0e-93 345.9 307 54.4
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 3.0e-93 345.9 314 52.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.9e-93 345.5 307 55.0
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 5.0e-93 345.1 307 54.4
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 8.6e-93 344.4 309 52.1
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.5e-92 343.6 309 52.4
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.5e-92 343.6 306 52.0
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.5e-92 343.6 307 54.1
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.9e-92 343.2 308 55.8
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 2.5e-92 342.8 311 53.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.5e-92 342.8 310 54.2
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 3.3e-92 342.4 309 52.1
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.3e-92 342.4 319 55.5
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.3e-92 342.0 311 52.4
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.6e-92 341.7 296 56.1
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 5.6e-92 341.7 307 54.7
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 9.5e-92 340.9 307 52.4
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 1.2e-91 340.5 311 53.4
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-91 340.5 307 53.4
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 1.6e-91 340.1 314 51.9
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-91 340.1 307 52.1
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-91 340.1 307 52.1
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.1e-91 339.7 306 52.0
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 2.1e-91 339.7 307 53.1
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 3.6e-91 339.0 307 53.1
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 4.7e-91 338.6 311 53.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 6.2e-91 338.2 308 54.2
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 8.1e-91 337.8 309 54.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.1e-90 337.4 307 53.7
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.8e-90 336.7 309 52.1
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 8.9e-90 334.3 308 53.6
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.2e-89 334.0 308 51.9
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 1.2e-89 334.0 307 54.1
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 1.5e-89 333.6 310 53.5
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 2.6e-89 332.8 293 53.2
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.4e-89 332.4 307 52.8
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 7.5e-89 331.3 307 53.4
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 9.9e-89 330.9 310 52.3
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.3e-88 330.5 309 50.5
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.2e-88 329.7 309 51.8
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.2e-88 329.7 310 51.6
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 6.4e-88 328.2 295 53.6
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 8.3e-88 327.8 307 50.5
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.2e-87 325.9 297 51.5
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.1e-87 324.7 307 51.5
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 9.2e-87 324.3 275 58.2
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.1e-86 323.2 310 51.9
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.7e-86 322.8 275 57.8
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.6e-83 313.5 308 48.7
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 8.9e-82 307.8 310 51.0
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 2.0e-81 306.6 309 49.2
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 4.4e-81 305.4 313 47.3
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 9.9e-81 304.3 278 55.8
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 1.3e-80 303.9 316 48.7
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 8.4e-80 301.2 311 48.9
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 4.6e-78 295.4 307 49.2
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 4.6e-78 295.4 272 52.2
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.8e-75 286.2 283 52.3
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.7e-75 285.4 292 49.0
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.7e-75 285.4 292 49.0
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.1e-74 284.3 307 46.6
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-73 279.3 292 49.0
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 3.6e-67 259.2 305 43.9
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.7e-64 250.4 298 47.0
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 1.0e-61 241.1 226 53.1
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 5.6e-60 235.3 218 52.3
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 2.2e-48 196.8 172 57.0
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.1e-47 191.8 298 38.9
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.0e-45 186.4 273 42.1
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 4.5e-41 172.6 128 61.7
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.7e-36 155.6 103 67.0
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.1e-34 149.8 120 52.5
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.8e-32 142.9 246 34.1
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 8.5e-32 141.7 288 32.3
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.4e-26 124.4 95 60.0
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.8e-21 107.5 325 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 4.8e-19 99.4 226 31.0
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.6e-12 77.0 48 72.9


User provided reference genes

Program Settings