Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 8.3e-238 826.6 414 100.0
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.4e-83 314.3 229 66.8
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.8e-83 313.9 233 65.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 1.8e-83 313.9 229 66.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.1e-83 313.2 248 62.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 4.0e-83 312.8 231 64.1
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.6e-82 310.1 210 69.0
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.6e-82 310.1 230 67.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 4.5e-82 309.3 228 65.8
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 4.5e-82 309.3 228 65.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 5.8e-82 308.9 211 69.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 9.9e-82 308.1 229 65.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.3e-81 307.8 211 69.7
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-81 307.8 211 69.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 2.2e-81 307.0 230 64.8
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.8e-81 306.2 245 63.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 4.9e-81 305.8 211 68.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 8.4e-81 305.1 207 68.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.4e-80 304.3 255 59.2
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.4e-80 304.3 253 61.7
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.4e-80 304.3 236 63.6
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.9e-80 303.9 255 59.2
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-80 303.9 228 64.5
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.9e-80 303.9 211 67.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.4e-80 303.5 211 67.3
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-80 303.5 233 63.9
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 3.2e-80 303.1 274 56.6
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.2e-80 303.1 236 63.6
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.2e-80 302.8 250 61.2
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 7.1e-80 302.0 211 68.7
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 7.1e-80 302.0 277 55.6
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.1e-80 302.0 233 62.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 7.1e-80 302.0 248 60.1
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.3e-80 301.6 211 67.3
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 9.3e-80 301.6 229 63.8
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.2e-79 301.2 237 60.8
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.6e-79 300.8 211 67.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.6e-79 300.8 210 69.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.1e-79 300.4 221 66.5
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.1e-79 300.4 224 65.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.7e-79 300.1 211 66.4
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.5e-79 299.7 211 66.8
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 3.5e-79 299.7 224 65.2
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 3.5e-79 299.7 225 64.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.6e-79 299.3 264 58.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 6.0e-79 298.9 248 59.7
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 6.0e-79 298.9 220 66.4
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.9e-79 298.5 248 62.1
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 7.9e-79 298.5 208 68.8
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.0e-78 298.1 211 67.3
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.0e-78 298.1 211 66.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.0e-78 298.1 275 54.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.3e-78 297.7 257 59.5
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.8e-78 297.4 229 63.8
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 3.0e-78 296.6 224 63.8
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 3.0e-78 296.6 227 63.0
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 5.1e-78 295.8 257 58.4
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 6.7e-78 295.4 247 60.7
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 6.7e-78 295.4 236 59.3
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.7e-78 295.4 311 51.1
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 8.7e-78 295.0 257 59.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.7e-78 295.0 239 61.1
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 8.7e-78 295.0 236 61.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 8.7e-78 295.0 211 65.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.1e-77 294.7 232 61.6
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.5e-77 294.3 256 58.6
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.9e-77 293.9 206 68.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.5e-77 293.5 257 58.4
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 3.3e-77 293.1 203 68.0
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 3.3e-77 293.1 220 64.5
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.3e-77 292.7 206 67.5
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.6e-77 292.4 206 68.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 5.6e-77 292.4 211 66.8
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 9.6e-77 291.6 203 68.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.6e-77 291.6 207 66.2
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.6e-76 290.8 246 60.2
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.6e-76 290.8 236 60.6
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 2.8e-76 290.0 210 65.7
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 6.2e-76 288.9 251 57.8
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 8.1e-76 288.5 218 64.2
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.1e-75 288.1 206 66.5
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.8e-75 287.3 206 66.5
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.8e-75 287.3 239 60.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.4e-75 287.0 229 61.1
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 4.0e-75 286.2 232 60.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 6.9e-75 285.4 220 62.7
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 6.9e-75 285.4 206 65.5
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.2e-74 284.6 250 57.2
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.5e-74 284.3 210 65.2
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 2.0e-74 283.9 234 60.3
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.5e-74 282.7 211 64.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 4.5e-74 282.7 203 66.5
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.5e-74 282.7 206 66.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 7.6e-74 282.0 210 63.8
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.3e-73 281.2 207 64.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-73 281.2 241 56.8
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.3e-73 281.2 206 65.5
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 8.4e-73 278.5 206 65.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.4e-72 277.7 233 60.5
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.7e-71 273.5 245 57.6
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.7e-71 273.5 211 62.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 6.0e-71 272.3 245 57.1
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.3e-70 271.2 184 70.1
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.7e-70 268.9 196 67.3
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.9e-69 267.3 206 63.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.3e-69 266.5 202 63.9
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 3.3e-69 266.5 227 58.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 5.7e-69 265.8 215 60.0
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 2.1e-68 263.8 218 61.0
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 6.3e-68 262.3 212 59.0
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.8e-67 260.8 203 63.5
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.0e-67 258.5 257 56.0
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 8.5e-65 251.9 207 57.5
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 9.7e-61 238.4 202 59.9
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 4.1e-59 233.0 211 54.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.5e-58 231.1 167 68.9
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 6.5e-57 225.7 213 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 7.2e-56 222.2 209 50.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.7e-55 220.3 233 48.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.3e-54 217.2 213 53.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 5.1e-54 216.1 210 54.3
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.7e-52 211.1 182 61.0
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 6.1e-47 192.6 191 53.4
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.1e-45 188.3 181 56.9
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.0e-45 187.6 235 40.0
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.8e-43 181.0 136 66.2
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 5.5e-40 169.5 219 42.0
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 5.2e-38 162.9 119 62.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.1e-35 153.7 109 67.9
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.7e-28 130.2 158 51.9
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.8e-28 129.8 130 52.3
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.2e-24 117.1 75 76.0
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 9.8e-21 105.5 146 40.4
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 4.9e-20 103.2 80 68.8
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.3e-17 95.1 91 47.3
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 6.1e-15 86.3 59 71.2
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.8e-11 74.7 248 32.3
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.3e-09 68.6 46 69.6
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 5.6e-08 63.2 42 69.0


User provided reference genes

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