Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03282 Sapria himalayana HOM05D001692 ORTHO05D005276 6.1e-54 213.8 99 100.0
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 3.5e-17 91.7 60 78.3
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 4.6e-17 91.3 60 78.3
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 6.0e-17 90.9 57 73.7
AL1G62170 Arabidopsis lyrata HOM05D001692 ORTHO05D005276 7.8e-17 90.5 56 75.0
AT1G53580 Arabidopsis thaliana HOM05D001692 ORTHO05D005276 7.8e-17 90.5 56 75.0
BcaB07g33320 Brassica carinata HOM05D001692 ORTHO05D005276 7.8e-17 90.5 57 73.7
BcaC08g43540 Brassica carinata HOM05D001692 ORTHO05D005276 7.8e-17 90.5 57 73.7
C06p09290 Brassica napus HOM05D001692 ORTHO05D005276 7.8e-17 90.5 57 73.7
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 7.8e-17 90.5 49 87.8
EL10Ac4g08464 Beta vulgaris HOM05D001692 ORTHO05D005276 1.3e-16 89.7 51 82.4
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 1.7e-16 89.4 56 73.2
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 1.7e-16 89.4 49 83.7
A06p00940 Brassica napus HOM05D001692 ORTHO05D005276 2.3e-16 89.0 57 71.9
CANSAT64G1255 Cannabis sativa HOM05D001692 ORTHO05D005276 2.3e-16 89.0 60 75.0
AUR62037988 Chenopodium quinoa HOM05D001692 ORTHO05D005276 2.3e-16 89.0 55 76.4
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 2.3e-16 89.0 49 83.7
Ciclev10021343m.g Citrus clementina HOM05D001692 ORTHO05D005276 2.3e-16 89.0 60 71.7
Prupe.3G177200 Prunus persica HOM05D001692 ORTHO05D005276 2.3e-16 89.0 49 83.7
Aqoxy1G01726 Aquilegia oxysepala HOM05D001692 ORTHO05D005276 3.0e-16 88.6 49 85.7
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 3.9e-16 88.2 84 54.8
DCAR_019628 Daucus carota HOM05D001692 ORTHO05D005276 5.0e-16 87.8 51 78.4
PGR042G3356 Punica granatum HOM05D001692 ORTHO05D005276 5.0e-16 87.8 49 83.7
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 5.0e-16 87.8 52 76.9
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 6.6e-16 87.4 60 75.0
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 6.6e-16 87.4 55 74.5
Thhalv10011701m.g Eutrema salsugineum HOM05D001692 ORTHO05D005276 6.6e-16 87.4 49 81.6
MD09G1149000 Malus domestica HOM05D001692 ORTHO05D005276 6.6e-16 87.4 49 83.7
Peaxi162Scf00111g00115 Petunia axillaris HOM05D001692 ORTHO05D005276 6.6e-16 87.4 49 81.6
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 6.6e-16 87.4 54 74.1
PGSC0003DMG400008562 Solanum tuberosum HOM05D001692 ORTHO05D005276 6.6e-16 87.4 54 74.1
Lj8A144G64 Lonicera japonica HOM05D001692 ORTHO05D005276 8.6e-16 87.0 51 78.4
PSO541G6360 Papaver somniferum HOM05D001692 ORTHO05D005276 8.6e-16 87.0 49 81.6
PSO675G6085 Papaver somniferum HOM05D001692 ORTHO05D005276 8.6e-16 87.0 49 81.6
Sabra05G0155400 Salix brachista HOM05D001692 ORTHO05D005276 8.6e-16 87.0 49 81.6
Sc03g0010860 Simmondsia chinensis HOM05D001692 ORTHO05D005276 8.6e-16 87.0 51 78.4
GSVIVG01020841001 Vitis vinifera HOM05D001692 ORTHO05D005276 8.6e-16 87.0 49 83.7
BcaB04g17072 Brassica carinata HOM05D001692 ORTHO05D005276 1.1e-15 86.7 56 71.4
A08p01500 Brassica napus HOM05D001692 ORTHO05D005276 1.1e-15 86.7 52 76.9
BraA08t32202Z Brassica rapa HOM05D001692 ORTHO05D005276 1.1e-15 86.7 52 76.9
CAN.G1320.2 Capsicum annuum HOM05D001692 ORTHO05D005276 1.1e-15 86.7 54 74.1
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 1.1e-15 86.7 56 67.9
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.1e-15 86.7 49 81.6
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 1.1e-15 86.7 49 81.6
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.1e-15 86.7 49 81.6
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 1.1e-15 86.7 60 70.0
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 1.5e-15 86.3 49 79.6
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 1.5e-15 86.3 49 79.6
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 1.5e-15 86.3 51 78.4
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 1.5e-15 86.3 54 70.4
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 1.5e-15 86.3 49 81.6
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 1.9e-15 85.9 49 79.6
CARHR043840 Cardamine hirsuta HOM05D001692 ORTHO05D005276 1.9e-15 85.9 52 76.9
Manes.02G089400 Manihot esculenta HOM05D001692 ORTHO05D005276 1.9e-15 85.9 52 76.9
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 1.9e-15 85.9 49 81.6
SGA_v2.0_scaffold70G23592 Striga asiatica HOM05D001692 ORTHO05D005276 1.9e-15 85.9 53 75.5
GSVIVG01000481001 Vitis vinifera HOM05D001692 ORTHO05D005276 1.9e-15 85.9 51 76.5
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 79.6
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 79.6
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 79.6
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 79.6
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 77.6
unitig_899.g15303 Utricularia gibba HOM05D001692 ORTHO05D005276 2.5e-15 85.5 49 79.6
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 3.3e-15 85.1 49 81.6
Gohir.D03G015800 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.3e-15 85.1 49 79.6
Gohir.D06G025300 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.3e-15 85.1 49 79.6
Gohir.D11G187900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.3e-15 85.1 49 79.6
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 3.3e-15 85.1 49 79.6
TPR.G19262 Trifolium pratense HOM05D001692 ORTHO05D005276 3.3e-15 85.1 49 79.6
COL.COLO4_08889 Corchorus olitorius HOM05D001692 ORTHO05D005276 4.3e-15 84.7 51 76.5
Eucgr.A02020 Eucalyptus grandis HOM05D001692 ORTHO05D005276 4.3e-15 84.7 49 81.6
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 4.3e-15 84.7 49 77.6
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 4.3e-15 84.7 49 79.6
CAN.G375.74 Capsicum annuum HOM05D001692 ORTHO05D005276 5.6e-15 84.3 49 79.6
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 5.6e-15 84.3 49 77.6
Sed0008182 Sechium edule HOM05D001692 ORTHO05D005276 5.6e-15 84.3 51 72.5
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 5.6e-15 84.3 54 72.2
MSTRG.15020 Avicennia marina HOM05D001692 ORTHO05D005276 7.3e-15 84.0 49 79.6
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 7.3e-15 84.0 60 70.0
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 7.3e-15 84.0 49 79.6
Potri.005G204800 Populus trichocarpa HOM05D001692 ORTHO05D005276 7.3e-15 84.0 49 77.6
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 7.3e-15 84.0 49 79.6
FAN05G1140 Fragaria x ananassa HOM05D001692 ORTHO05D005276 9.5e-15 83.6 53 73.6
CANSAT56G0439 Cannabis sativa HOM05D001692 ORTHO05D005276 1.2e-14 83.2 57 71.9
MELO3C025595.2 Cucumis melo HOM05D001692 ORTHO05D005276 1.2e-14 83.2 51 72.5
CsaV3_4G032640 Cucumis sativus L. HOM05D001692 ORTHO05D005276 1.2e-14 83.2 51 72.5
Gohir.D04G055900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.2e-14 83.2 49 77.6
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.2e-14 83.2 49 77.6
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 1.6e-14 82.8 60 70.0
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 1.6e-14 82.8 60 70.0
TWI59G0785 Tripterygium wilfordii HOM05D001692 ORTHO05D005276 1.6e-14 82.8 49 79.6
Gorai.005G073200 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.1e-14 82.4 49 77.6
Oeu001313.1 Olea europaea HOM05D001692 ORTHO05D005276 2.1e-14 82.4 49 79.6
CiPaw.03G191700 Carya illinoinensis HOM05D001692 ORTHO05D005276 2.8e-14 82.0 49 77.6
Peaxi162Scf00000g05119 Petunia axillaris HOM05D001692 ORTHO05D005276 2.8e-14 82.0 49 77.6
Pp3c9_13000 Physcomitrium patens HOM05D001692 ORTHO05D005276 2.8e-14 82.0 51 74.5
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 2.8e-14 82.0 51 72.5
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
FvH4_6g38610 Fragaria vesca HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
FAN02G2152 Fragaria x ananassa HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
FAN14G4917 Fragaria x ananassa HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
Nn4g26535 Nelumbo nucifera HOM05D001692 ORTHO05D005276 3.6e-14 81.6 51 72.5
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 3.6e-14 81.6 48 77.1
Sed0012666 Sechium edule HOM05D001692 ORTHO05D005276 3.6e-14 81.6 51 70.6
vmacro09423 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 3.6e-14 81.6 49 77.6
Gorai.006G053200 Gossypium raimondii HOM05D001692 ORTHO05D005276 4.7e-14 81.3 49 75.5
Os01g0667200 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D005276 4.7e-14 81.3 52 69.2
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 8.1e-14 80.5 51 72.5
RhsimUnG0205900 Rhododendron simsii HOM05D001692 ORTHO05D005276 8.1e-14 80.5 49 75.5
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 8.1e-14 80.5 48 75.0
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 1.1e-13 80.1 49 75.5
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 1.1e-13 80.1 50 78.0
ATR0585G035 Amborella trichopoda HOM05D001692 ORTHO05D005276 1.4e-13 79.7 49 77.6
Cc05_g10460 Coffea canephora HOM05D001692 ORTHO05D005276 1.4e-13 79.7 49 77.6
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 1.8e-13 79.3 49 77.6
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 1.8e-13 79.3 49 77.6
RcHm_v2.0_Chr2g0152061 Rosa chinensis HOM05D001692 ORTHO05D005276 1.8e-13 79.3 49 73.5
Sabra16G0250400 Salix brachista HOM05D001692 ORTHO05D005276 1.8e-13 79.3 49 73.5
SMO364G0689 Selaginella moellendorffii HOM05D001692 ORTHO05D005276 1.8e-13 79.3 49 75.5
BolC6t36007H Brassica oleracea HOM05D001692 ORTHO05D005276 5.2e-13 77.8 44 81.8
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 6.8e-13 77.4 49 75.5
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 1.2e-12 76.6 44 86.4
FAN09G0561 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.5e-12 76.3 49 73.5
CBR_g52354 Chara braunii HOM05D001692 ORTHO05D005276 2.6e-12 75.5 51 66.7
HPP92_009985 Vanilla planifolia HOM05D001692 ORTHO05D005276 3.4e-12 75.1 49 71.4
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 4.4e-12 74.7 49 69.4
Pp3c15_10210 Physcomitrium patens HOM05D001692 ORTHO05D005276 5.8e-12 74.3 51 66.7
CARHR042800 Cardamine hirsuta HOM05D001692 ORTHO05D005276 7.5e-12 73.9 52 69.2
CARHR043830 Cardamine hirsuta HOM05D001692 ORTHO05D005276 7.5e-12 73.9 52 69.2
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 1.7e-11 72.8 60 65.0
Mapoly0002s0284 Marchantia polymorpha HOM05D001692 ORTHO05D005276 2.2e-11 72.4 49 65.3
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 4.9e-11 71.2 49 69.4
CDE02G3376 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 6.4e-11 70.9 49 67.3
MBI10_g02223_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 5.4e-10 67.8 62 62.9
MBI10_g05866_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 5.4e-10 67.8 62 62.9
PRCOL_00005441 Prasinoderma coloniale HOM05D001692 ORTHO05D005276 6.6e-08 60.8 49 57.1
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 1.9e-07 59.3 46 60.9
MCO11G587 Micromonas commoda HOM05D001692 ORTHO05D005276 1.9e-07 59.3 74 44.6
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 6.2e-06 54.3 35 71.4
Zm00001eb157380 Zea mays HOM05D001692 ORTHO05D005276 6.2e-06 54.3 100 35.0


User provided reference genes

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