Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03233 Sapria himalayana HOM05D000452 ORTHO05D000647 4.9e-190 667.5 315 100.0
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 1.1e-43 181.4 206 49.0
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 2.4e-43 180.3 206 48.1
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 2.4e-43 180.3 206 47.1
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 2.4e-43 180.3 206 49.5
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 2.0e-42 177.2 206 47.1
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 3.4e-42 176.4 211 45.5
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 4.5e-42 176.0 222 44.1
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 4.5e-42 176.0 206 47.6
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 5.9e-42 175.6 206 46.1
THA.LOC104815402 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 5.9e-42 175.6 206 48.1
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 7.6e-42 175.3 206 46.6
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 1.3e-41 174.5 206 46.6
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 1.7e-41 174.1 206 47.6
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.8e-41 172.9 206 46.1
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 3.8e-41 172.9 206 45.6
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 5.0e-41 172.6 206 47.1
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 5.0e-41 172.6 206 47.6
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 6.5e-41 172.2 206 46.1
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.5e-41 172.2 206 46.1
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 1.4e-40 171.0 211 45.5
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 1.9e-40 170.6 206 46.6
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 2.5e-40 170.2 206 47.1
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 3.2e-40 169.9 244 42.2
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 3.2e-40 169.9 206 46.6
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 4.2e-40 169.5 208 45.7
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 7.2e-40 168.7 208 45.7
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 9.4e-40 168.3 206 46.6
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 9.4e-40 168.3 206 45.1
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 2.1e-39 167.2 206 45.1
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 2.7e-39 166.8 207 46.4
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 2.7e-39 166.8 206 45.6
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 3.6e-39 166.4 207 46.4
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 3.6e-39 166.4 206 45.1
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 4.6e-39 166.0 206 44.2
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 4.6e-39 166.0 206 44.7
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 4.6e-39 166.0 206 43.2
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 4.6e-39 166.0 207 46.4
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 6.1e-39 165.6 207 46.9
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 7.9e-39 165.2 207 45.9
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 1.4e-38 164.5 206 44.2
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 1.4e-38 164.5 208 44.7
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 2.3e-38 163.7 195 46.7
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 2.3e-38 163.7 206 44.2
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 3.0e-38 163.3 206 43.7
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 3.0e-38 163.3 206 44.7
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 5.1e-38 162.5 207 44.9
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 5.1e-38 162.5 206 44.2
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 6.7e-38 162.2 207 45.4
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 6.7e-38 162.2 207 45.4
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 8.8e-38 161.8 206 45.6
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 1.9e-37 160.6 212 43.4
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 1.9e-37 160.6 211 45.0
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 2.5e-37 160.2 206 43.2
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 3.3e-37 159.8 207 45.4
MBI14_g13651_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 3.3e-37 159.8 206 44.7
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 4.3e-37 159.5 206 43.7
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 4.3e-37 159.5 206 43.7
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 4.3e-37 159.5 211 44.1
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.3e-37 159.5 211 44.1
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.3e-37 159.5 211 44.1
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.3e-37 159.5 211 44.1
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 5.7e-37 159.1 206 45.1
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 5.7e-37 159.1 206 43.2
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 7.4e-37 158.7 206 41.7
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 9.7e-37 158.3 206 43.2
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 9.7e-37 158.3 211 43.6
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 9.7e-37 158.3 241 40.7
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 9.7e-37 158.3 211 43.1
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 1.3e-36 157.9 206 43.2
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 1.3e-36 157.9 211 43.1
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.8e-36 156.0 206 44.2
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.8e-36 156.0 206 44.2
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 4.8e-36 156.0 206 44.2
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 6.3e-36 155.6 222 41.9
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 8.2e-36 155.2 216 42.6
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 1.4e-35 154.5 206 43.7
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 1.4e-35 154.5 206 42.2
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 4.1e-35 152.9 206 42.2
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 6.9e-35 152.1 222 42.3
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 6.9e-35 152.1 214 41.1
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 9.1e-35 151.8 223 42.2
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 9.1e-35 151.8 206 42.7
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 9.1e-35 151.8 211 43.6
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 1.2e-34 151.4 206 42.7
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 1.0e-33 148.3 206 41.3
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 43.7
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 43.7
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 41.7
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 41.7
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 41.7
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 40.8
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 41.3
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 1.7e-33 147.5 206 40.8
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 2.2e-33 147.1 206 39.3
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 2.9e-33 146.7 206 41.7
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 8.5e-33 145.2 206 39.8
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 1.1e-32 144.8 206 42.2
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 1.9e-32 144.1 209 40.2
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 2.5e-32 143.7 206 40.8
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 2.5e-32 143.7 206 41.3
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 2.5e-32 143.7 206 41.3
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 2.5e-32 143.7 206 41.3
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 3.2e-32 143.3 206 40.8
Sabra06G0144600 Salix brachista HOM05D000452 ORTHO05D000647 3.2e-32 143.3 173 47.4
Lalb_Chr08g0233861 Lupinus albus HOM05D000452 ORTHO05D000647 5.5e-32 142.5 239 37.7
Phvul.003G175600 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 5.5e-32 142.5 206 40.3
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 9.4e-32 141.7 211 40.8
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 1.2e-31 141.4 207 40.6
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 1.6e-31 141.0 206 40.3
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 1.0e-30 138.3 222 37.8
Lalb_Chr13g0301161 Lupinus albus HOM05D000452 ORTHO05D000647 1.8e-30 137.5 206 41.7
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 1.8e-30 137.5 206 37.9
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 8.8e-30 135.2 173 43.4
Sc08g0004960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 8.8e-30 135.2 211 39.3
Haze_19303 Corylus avellana HOM05D000452 ORTHO05D000647 4.4e-29 132.9 173 42.8
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 9.7e-29 131.7 216 34.7
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 1.4e-27 127.9 182 38.5
arahy.Tifrunner.gnm1.ann1.I6E49E Arachis hypogaea HOM05D000452 ORTHO05D000647 1.5e-26 124.4 207 35.7
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 4.5e-26 122.9 97 58.8
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 4.5e-26 122.9 238 31.9
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 5.9e-26 122.5 217 32.7
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 5.9e-26 122.5 211 37.9
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.4e-24 117.9 178 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1413 Anthoceros agrestis HOM05D000452 ORTHO05D000647 3.0e-22 110.2 246 30.1
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 3.0e-22 110.2 213 36.2
SEGI_35613 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 3.0e-22 110.2 172 39.0
Pp3c6_26940 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.6e-21 107.1 206 31.1
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.8e-20 103.6 180 32.2
DCAR_014828 Daucus carota HOM05D000452 ORTHO05D000647 4.8e-20 102.8 221 33.5
Phvul.009G208300 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 1.1e-19 101.7 173 34.7
SMO367G0695 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 5.3e-19 99.4 206 30.6
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 7.0e-19 99.0 180 31.1
MD07G1049800 Malus domestica HOM05D000452 ORTHO05D000647 9.1e-19 98.6 90 52.2
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 8.5e-17 92.0 98 43.9
SHI24351 Sapria himalayana HOM05D000452 ORTHO05D000647 2.5e-16 90.5 145 42.8
Ca_02483_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 7.2e-16 89.0 66 57.6
Ah.14g078560 Amaranthus hybridus HOM05D000452 ORTHO05D000647 2.6e-13 80.5 60 56.7
Cpa.g.sc46.102 Carica papaya HOM05D000452 ORTHO05D000647 7.7e-10 68.9 54 61.1
SHI24350 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-09 68.2 31 93.5
SHI01944 Sapria himalayana HOM05D000023 ORTHO05D000014 4.2e-08 63.2 45 68.9
SHI29403 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-07 61.2 42 66.7
SHI06077 Sapria himalayana HOM05D001528 ORTHO05D002760 2.7e-07 60.5 43 72.1
Zm00001eb041250 Zea mays HOM05D000452 ORTHO05D000647 8.0e-07 58.9 50 54.0


User provided reference genes

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