Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.2e-123 446.4 214 100.0
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.5e-81 305.8 165 87.3
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 7.4e-81 304.3 168 85.1
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.2e-80 302.8 165 86.7
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.2e-80 302.8 169 84.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 4.8e-80 301.6 165 86.1
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 8.2e-80 300.8 165 86.7
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 8.2e-80 300.8 169 83.4
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 1.4e-79 300.1 165 84.2
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.8e-79 299.7 165 86.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.8e-79 299.7 169 82.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.8e-79 299.7 165 84.8
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.1e-79 298.5 165 85.5
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 4.1e-79 298.5 169 82.8
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 5.3e-79 298.1 169 81.7
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.3e-79 298.1 165 86.1
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 5.3e-79 298.1 165 84.2
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 6.9e-79 297.7 165 84.8
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 6.9e-79 297.7 169 81.7
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 6.9e-79 297.7 165 84.8
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 6.9e-79 297.7 165 85.5
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 9.1e-79 297.4 165 84.8
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.2e-78 297.0 165 86.7
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.5e-78 296.6 165 83.6
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-78 296.6 165 84.2
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.0e-78 296.2 169 81.7
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 2.0e-78 296.2 169 82.2
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.0e-78 296.2 165 83.0
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 2.6e-78 295.8 169 80.5
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 2.6e-78 295.8 169 81.7
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.4e-78 295.4 165 84.2
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 4.5e-78 295.0 165 84.2
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 4.5e-78 295.0 165 84.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.5e-78 295.0 165 84.8
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 4.5e-78 295.0 165 84.2
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.5e-78 295.0 165 84.2
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 7.7e-78 294.3 165 84.2
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 7.7e-78 294.3 169 81.1
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.0e-77 293.9 169 81.7
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.0e-77 293.9 169 81.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.0e-77 293.9 169 81.1
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.0e-77 293.9 169 82.2
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.0e-77 293.9 169 81.1
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.3e-77 293.5 165 83.0
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.3e-77 293.5 165 83.0
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.3e-77 293.5 165 83.6
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.7e-77 293.1 169 81.1
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 2.2e-77 292.7 165 81.2
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.2e-77 292.7 169 81.7
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 2.9e-77 292.4 169 81.1
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.9e-77 292.4 165 83.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.9e-77 292.4 165 83.6
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-77 292.4 165 84.2
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.8e-77 292.0 165 83.6
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.0e-77 291.6 169 81.1
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.0e-77 291.6 169 80.5
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.0e-77 291.6 169 80.5
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 5.0e-77 291.6 169 80.5
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 5.0e-77 291.6 169 80.5
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 5.0e-77 291.6 165 83.6
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 6.5e-77 291.2 165 85.5
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 6.5e-77 291.2 165 83.6
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 8.5e-77 290.8 165 83.6
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.1e-76 290.4 169 79.9
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.1e-76 290.4 165 84.2
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.1e-76 290.4 165 83.0
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.1e-76 290.4 186 76.3
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.4e-76 290.0 165 81.8
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 2.5e-76 289.3 167 80.8
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 3.2e-76 288.9 165 82.4
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.5e-76 288.1 167 80.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 5.5e-76 288.1 169 80.5
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 5.5e-76 288.1 169 80.5
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 5.5e-76 288.1 169 80.5
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 5.5e-76 288.1 169 80.5
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 7.2e-76 287.7 168 81.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 7.2e-76 287.7 167 80.8
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 7.2e-76 287.7 165 84.2
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 9.4e-76 287.3 168 81.0
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 1.6e-75 286.6 167 82.6
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.6e-75 286.6 165 82.4
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.6e-75 286.6 165 82.4
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.1e-75 286.2 176 77.8
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.1e-75 286.2 169 79.9
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.6e-75 285.4 167 79.6
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.6e-75 285.4 165 81.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 4.7e-75 285.0 167 79.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 3.9e-74 282.0 165 81.8
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 6.7e-74 281.2 165 80.6
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 6.7e-74 281.2 165 81.2
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.4e-73 278.5 165 77.6
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 7.4e-73 277.7 165 77.6
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 9.7e-73 277.3 217 65.4
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 9.7e-73 277.3 165 77.0
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 9.7e-73 277.3 181 74.0
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.3e-72 274.6 167 76.6
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.8e-71 273.1 172 77.3
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.6e-70 269.2 154 83.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.6e-70 269.2 153 85.6
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 7.5e-65 251.1 153 79.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.7e-62 242.7 167 70.1
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 4.5e-62 241.9 133 85.7
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.7e-61 240.0 169 66.3
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 6.5e-61 238.0 165 66.7
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.5e-60 236.9 158 67.7
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 7.2e-60 234.6 167 68.9
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.2e-59 233.8 146 75.3
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 6.1e-59 231.5 132 81.8
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 3.4e-57 225.7 134 79.9
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.4e-57 225.3 169 63.3
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 7.5e-57 224.6 161 68.9
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 5.4e-55 218.4 123 81.3
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 7.7e-54 214.5 132 76.5
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.8e-53 212.2 122 80.3
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.0e-53 211.8 168 64.9
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 6.5e-53 211.5 125 80.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 6.5e-53 211.5 122 79.5
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.5e-52 210.3 129 79.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 7.2e-52 208.0 122 78.7
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.2e-51 207.2 122 79.5
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.2e-51 207.2 122 79.5
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.8e-50 203.4 125 76.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-48 196.8 158 63.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 7.0e-47 191.4 129 71.3
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 7.3e-44 181.4 128 70.3
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-41 174.1 124 70.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.9e-40 168.7 127 65.4
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.0e-38 163.3 93 82.8
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-38 163.3 92 81.5
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 3.0e-37 159.5 90 84.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.6e-37 158.3 96 77.1
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-35 153.7 95 75.8
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-34 150.6 104 68.3
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-34 150.2 101 74.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-34 149.1 95 75.8
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-33 146.7 94 71.3
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.3e-32 141.4 88 72.7
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.0e-29 132.9 75 80.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 1.9e-28 130.2 73 82.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.9e-28 130.2 95 66.3
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.9e-26 121.3 77 76.6
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.3e-24 117.5 94 61.7
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.2e-23 112.8 75 72.0
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 7.1e-23 111.7 181 35.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 2.1e-22 110.2 103 55.3
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.2e-16 90.1 85 57.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 3.2e-15 86.3 52 76.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 6.0e-06 55.5 28 78.6


User provided reference genes

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