Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.6e-236 821.6 395 100.0
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.7e-139 500.0 483 54.2
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.2e-138 495.7 482 54.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.5e-138 495.0 480 53.8
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 7.1e-138 494.6 467 54.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 7.1e-138 494.6 468 54.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 9.3e-138 494.2 467 55.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.1e-137 493.0 481 53.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.8e-136 490.0 464 54.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.4e-135 484.6 465 53.8
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.4e-135 484.6 465 53.8
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 7.4e-135 484.6 464 54.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.6e-134 483.4 474 53.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.2e-134 483.0 474 52.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 4.8e-134 481.9 488 52.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.3e-134 481.5 480 52.5
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 8.2e-134 481.1 485 52.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.4e-133 480.3 486 51.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.8e-133 479.9 464 53.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 2.4e-133 479.6 474 53.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.1e-133 479.2 467 54.2
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 4.1e-133 478.8 480 52.5
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.1e-133 478.8 475 52.6
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.0e-132 476.5 475 52.6
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.6e-132 476.1 464 53.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.2e-130 469.2 464 53.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.6e-129 466.8 482 52.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.6e-129 466.8 462 52.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.0e-128 464.2 454 52.9
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.1e-127 460.7 517 50.1
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 9.7e-127 457.6 464 53.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.7e-127 457.6 467 51.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.2e-126 456.4 479 50.1
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.8e-126 456.1 466 50.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.8e-126 456.1 467 51.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 8.2e-126 454.5 536 48.5
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 8.2e-126 454.5 471 51.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 8.2e-126 454.5 464 53.0
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.4e-125 453.8 459 52.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.8e-125 453.4 494 49.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.1e-125 452.2 484 50.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 9.1e-125 451.1 458 52.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.5e-124 450.3 462 51.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.3e-123 447.2 458 53.1
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.7e-123 446.8 459 52.1
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.7e-123 446.8 475 50.7
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.9e-123 446.0 479 48.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.4e-122 443.7 460 52.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.9e-122 443.4 460 51.7
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.9e-122 443.4 477 50.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.2e-122 442.2 467 49.7
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 7.2e-122 441.4 458 50.9
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 1.6e-121 440.3 460 52.0
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.7e-121 438.7 484 50.2
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 7.9e-121 438.0 467 49.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.4e-120 437.2 476 50.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.0e-120 436.0 483 48.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-119 433.7 457 51.2
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.6e-119 433.0 461 49.9
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.6e-119 433.0 446 50.4
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.4e-119 431.4 489 46.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 9.7e-119 431.0 466 48.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-117 427.6 486 48.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-117 425.2 471 47.6
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.1e-117 424.5 476 50.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-116 422.9 471 47.6
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-116 422.9 471 47.6
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.6e-116 422.9 394 55.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.5e-116 422.2 455 50.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.9e-116 421.8 477 49.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.0e-115 421.0 451 48.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-115 420.6 458 51.1
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-115 420.2 466 50.2
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 2.2e-115 419.9 451 48.6
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 5.0e-115 418.7 486 46.1
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 6.5e-115 418.3 521 43.8
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.5e-114 416.4 484 46.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.2e-114 415.6 458 48.0
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.2e-114 415.6 464 46.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 5.5e-114 415.2 445 50.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 9.4e-114 414.5 460 48.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.6e-113 412.5 464 48.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.7e-113 412.1 456 49.6
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 8.0e-113 411.4 460 47.8
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 8.0e-113 411.4 460 47.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.4e-112 410.6 462 47.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.4e-112 410.6 471 47.3
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-112 410.2 486 45.9
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.9e-112 409.1 464 46.8
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 6.7e-112 408.3 481 45.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 8.8e-112 407.9 459 47.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.6e-111 406.4 371 57.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 7.4e-111 404.8 459 47.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.2e-110 403.3 459 47.1
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 5.3e-109 398.7 462 46.5
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.1e-109 397.9 439 49.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 9.1e-109 397.9 459 46.4
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-106 391.0 485 47.2
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 5.5e-106 388.7 484 46.7
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-105 386.0 497 43.7
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.6e-105 386.0 362 53.3
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.7e-103 378.6 495 42.8
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 9.7e-103 377.9 461 46.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 7.0e-101 371.7 357 54.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.7e-99 367.1 367 50.1
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.2e-98 361.7 389 48.3
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.6e-97 359.4 433 46.0
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-96 357.8 432 45.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-96 357.5 509 41.3
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.0e-92 343.6 411 48.4
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 3.5e-92 342.8 469 41.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.7e-92 341.7 494 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.1e-90 337.8 462 41.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.8e-88 330.5 424 43.9
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 8.9e-88 328.2 454 37.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.4e-87 325.9 454 38.8
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 7.5e-87 325.1 301 54.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-85 321.2 412 45.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 9.2e-85 318.2 313 52.1
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-79 301.2 325 47.7
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.5e-74 283.5 175 72.6
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 8.0e-73 278.5 433 41.1
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 3.0e-67 260.0 175 70.3
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.6e-66 255.8 346 43.4
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.6e-65 254.2 346 43.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.1e-65 251.9 239 54.8
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.1e-59 232.6 209 56.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.9e-58 230.7 381 35.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.3e-58 229.9 450 34.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 9.9e-55 218.4 205 55.6
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.0e-51 208.4 220 50.9
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.8e-47 192.6 359 34.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.4e-45 188.0 145 62.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 7.1e-45 185.7 401 32.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.7e-44 183.7 123 69.1
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.8e-35 154.5 168 53.0
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.9e-34 151.0 85 78.8
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 4.6e-28 129.8 140 48.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-24 118.2 179 41.3
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-24 117.1 181 39.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.8e-19 101.3 60 75.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 5.1e-19 99.8 130 40.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-18 97.4 115 47.0
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.3e-17 95.1 71 69.0
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-16 91.7 89 52.8
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.4e-15 87.0 123 40.7
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.9e-14 84.0 63 66.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.1e-12 77.8 179 33.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.1e-12 77.8 56 62.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.3e-11 74.3 36 83.3
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.5e-10 71.6 80 51.2
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 3.8e-06 57.0 47 66.0


User provided reference genes

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