Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 9.0e-72 273.5 137 100.0
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 4.8e-33 144.8 104 65.4
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 6.3e-33 144.4 104 66.3
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 6.3e-33 144.4 104 66.3
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.8e-32 142.9 104 65.4
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 2.0e-31 139.4 106 63.2
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 2.6e-31 139.0 110 61.8
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 7.7e-31 137.5 109 62.4
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 1.3e-30 136.7 109 61.5
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 1.7e-30 136.3 129 57.4
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 5.0e-30 134.8 106 62.3
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 4.2e-29 131.7 112 59.8
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 5.5e-29 131.3 104 58.7
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 7.2e-29 131.0 112 58.9
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 9.4e-29 130.6 89 68.5
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 9.4e-29 130.6 89 68.5
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 1.0e-27 127.1 105 60.0
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 1.8e-27 126.3 98 63.3
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 3.0e-27 125.6 96 64.6
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 3.0e-27 125.6 94 67.0
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 3.0e-27 125.6 94 67.0
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 3.0e-27 125.6 94 67.0
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 3.0e-27 125.6 94 66.0
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 6.7e-27 124.4 96 64.6
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 8.8e-27 124.0 96 63.5
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 1.5e-26 123.2 94 66.0
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 1.5e-26 123.2 94 66.0
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 1.5e-26 123.2 94 66.0
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 1.5e-26 123.2 108 55.6
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 2.6e-26 122.5 94 66.0
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 3.3e-26 122.1 94 64.9
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 3.3e-26 122.1 94 63.8
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 7.4e-26 120.9 94 64.9
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 7.4e-26 120.9 94 64.9
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 7.4e-26 120.9 94 64.9
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 9.7e-26 120.6 110 56.4
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.3e-25 120.2 101 58.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.8e-25 118.2 119 51.3
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 4.1e-24 115.2 85 62.4
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 7.0e-24 114.4 101 54.5
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 9.1e-24 114.0 91 59.3
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 9.1e-24 114.0 101 53.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.5e-23 112.1 118 50.8
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 3.5e-23 112.1 74 73.0
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 3.5e-23 112.1 104 51.9
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 1.0e-22 110.5 118 48.3
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.7e-22 109.8 90 61.1
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 1.7e-22 109.8 90 61.1
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 2.2e-22 109.4 104 50.0
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 2.9e-22 109.0 74 70.3
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.0e-22 108.2 84 61.9
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 5.0e-22 108.2 84 61.9
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.5e-21 106.7 101 50.5
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 1.9e-21 106.3 88 54.5
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 3.2e-21 105.5 106 49.1
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 4.2e-21 105.1 86 57.0
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 4.2e-21 105.1 86 57.0
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 5.5e-21 104.8 83 61.4
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 7.2e-21 104.4 84 60.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.0e-19 100.5 88 52.3
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 1.2e-18 97.1 96 51.0
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 2.2e-17 92.8 101 46.5
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.7e-17 92.0 96 49.0
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 7.0e-16 87.8 79 51.9
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 7.0e-16 87.8 81 53.1
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 1.7e-14 83.2 64 57.8
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 9.4e-13 77.4 103 38.8
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 1.8e-11 73.2 69 49.3
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.4e-10 68.9 57 56.1
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 2.8e-09 65.9 80 38.8
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 2.8e-09 65.9 80 38.8
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 4.1e-08 62.0 54 53.7
Nitab4.5_0004300g0280 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.8e-06 55.5 52 53.8


User provided reference genes

Program Settings