Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.5e-207 726.1 399 100.0
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.1e-64 251.5 227 58.6
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 6.9e-64 248.8 227 57.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 6.9e-64 248.8 228 57.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.4e-63 246.5 233 56.2
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 4.5e-63 246.1 227 57.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 7.6e-63 245.4 227 57.3
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 7.6e-63 245.4 230 56.5
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.6e-63 245.4 213 59.2
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 7.6e-63 245.4 213 59.2
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.0e-62 245.0 227 55.9
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.3e-62 244.6 213 58.7
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.2e-62 243.8 236 55.5
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 6.5e-62 242.3 225 57.3
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.1e-61 241.5 237 54.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.1e-61 241.5 231 55.4
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.4e-61 241.1 227 57.3
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 1.4e-61 241.1 236 55.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 1.4e-61 241.1 236 55.9
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.4e-61 241.1 236 55.9
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.4e-61 241.1 222 58.6
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.9e-61 240.7 224 58.0
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.5e-61 240.4 233 53.6
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.5e-61 240.4 231 55.4
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 2.5e-61 240.4 234 56.0
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 3.2e-61 240.0 228 53.9
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.2e-61 239.6 233 52.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 5.5e-61 239.2 237 54.9
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 5.5e-61 239.2 228 56.1
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 7.1e-61 238.8 228 55.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.2e-60 238.0 237 54.4
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 2.1e-60 237.3 223 55.6
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.7e-60 236.9 232 53.4
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 4.6e-60 236.1 233 53.2
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 6.0e-60 235.7 221 56.1
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 6.0e-60 235.7 223 55.2
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 1.0e-59 235.0 228 55.3
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.0e-59 235.0 224 55.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-59 234.2 219 56.6
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.8e-59 234.2 223 55.2
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 3.9e-59 233.0 220 55.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.9e-59 233.0 233 52.4
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 3.9e-59 233.0 223 55.2
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.9e-59 233.0 217 57.1
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 5.1e-59 232.6 219 56.2
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 5.1e-59 232.6 229 53.7
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 6.7e-59 232.3 223 55.2
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 6.7e-59 232.3 218 56.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 6.7e-59 232.3 233 54.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 8.7e-59 231.9 233 54.9
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 8.7e-59 231.9 222 55.4
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.1e-58 231.5 227 54.2
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.1e-58 231.5 218 56.0
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.1e-58 231.5 226 54.4
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.9e-58 230.7 223 55.2
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.9e-58 230.7 223 54.7
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.5e-58 230.3 232 54.3
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 2.5e-58 230.3 224 54.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 3.3e-58 229.9 234 52.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 4.3e-58 229.6 217 58.5
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.7e-58 229.2 226 55.8
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 5.7e-58 229.2 233 53.6
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 5.7e-58 229.2 222 54.5
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 5.7e-58 229.2 223 54.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 5.7e-58 229.2 220 55.5
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 7.4e-58 228.8 221 53.4
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 7.4e-58 228.8 213 57.3
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 9.6e-58 228.4 233 52.4
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 9.6e-58 228.4 227 55.1
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.3e-57 228.0 227 54.6
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 3.7e-57 226.5 225 53.8
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.8e-57 226.1 233 53.6
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.8e-57 226.1 233 53.6
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 6.3e-57 225.7 218 56.0
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 8.2e-57 225.3 230 55.2
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.4e-56 224.6 218 55.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.4e-56 224.6 233 53.2
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.4e-56 224.6 221 54.8
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.4e-56 223.8 230 54.8
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.1e-56 223.0 233 52.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.1e-56 223.0 219 55.3
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 4.1e-56 223.0 216 57.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 4.1e-56 223.0 214 55.1
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 6.9e-56 222.2 220 54.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 6.9e-56 222.2 226 53.5
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 9.0e-56 221.9 218 54.1
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 9.0e-56 221.9 217 54.4
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 9.0e-56 221.9 217 54.4
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 4.5e-55 219.5 226 53.5
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.7e-54 217.6 217 53.5
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 6.5e-54 215.7 219 53.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-53 214.5 242 48.8
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.9e-53 214.2 221 51.6
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 5.5e-53 212.6 219 51.6
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.2e-52 211.5 225 51.6
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.2e-52 211.5 218 52.8
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.6e-52 211.1 224 51.8
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 2.1e-52 210.7 213 51.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.1e-52 210.7 226 51.8
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 1.8e-51 207.6 213 52.6
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.3e-51 207.2 221 52.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.3e-51 207.2 223 49.8
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.1e-51 206.1 199 53.3
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.1e-50 204.9 220 51.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.5e-50 204.5 233 48.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.5e-50 204.5 236 47.5
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.5e-50 203.8 227 51.1
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 4.3e-50 203.0 236 47.0
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 7.4e-50 202.2 215 53.0
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 9.7e-50 201.8 233 48.5
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 9.7e-50 201.8 207 50.2
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 6.9e-48 195.7 221 49.3
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.5e-47 194.5 236 44.9
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.5e-47 194.5 272 44.1
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 3.4e-47 193.4 203 47.3
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 4.5e-47 193.0 206 51.9
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-46 191.4 223 47.5
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.2e-46 190.7 196 53.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-44 184.5 206 49.5
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.6e-44 183.3 216 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 3.9e-43 179.9 228 43.9
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.7e-41 174.5 206 44.2
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.7e-41 174.5 223 44.8
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 9.1e-32 142.1 230 34.8
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.6e-31 141.4 148 51.4
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.9e-29 134.4 212 41.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.6e-28 131.3 234 33.8
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 6.3e-25 119.4 130 50.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-24 118.2 95 62.1
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.1e-16 90.5 236 28.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 3.1e-16 90.5 232 25.9
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 7.0e-16 89.4 204 30.4
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.7e-15 87.4 63 65.1
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 3.5e-15 87.0 62 66.1
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 5.9e-15 86.3 68 58.8
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.0e-14 85.5 66 62.1
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 6.1e-12 76.3 229 27.5
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.4e-11 75.1 96 45.8
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.4e-10 70.5 50 66.0
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.8e-08 64.7 84 44.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 9.2e-08 62.4 43 62.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.5e-07 60.1 151 32.5


User provided reference genes

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