Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.9e-228 793.5 422 100.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 4.7e-63 246.1 403 44.9
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 3.4e-61 240.0 398 44.2
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.4e-61 239.6 408 43.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.7e-60 236.5 406 43.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.7e-60 236.5 404 43.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 6.4e-60 235.7 410 45.4
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 7.1e-59 232.3 402 43.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 7.1e-59 232.3 316 50.3
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 9.2e-59 231.9 408 44.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.6e-58 231.1 414 44.9
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.0e-58 229.2 413 43.1
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.0e-58 229.2 413 43.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.0e-57 228.4 422 42.2
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.3e-57 228.0 409 43.3
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.3e-57 227.3 405 43.7
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 8.6e-57 225.3 330 49.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.1e-56 224.9 398 43.2
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.5e-56 224.6 412 42.5
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.9e-56 224.2 414 42.5
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-56 224.2 406 42.4
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-56 224.2 401 42.9
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.9e-56 224.2 407 42.5
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 5.6e-56 222.6 408 43.6
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.3e-56 222.2 321 48.3
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.6e-55 221.1 419 43.4
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.6e-55 219.9 405 42.0
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 6.2e-55 219.2 405 42.0
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 6.2e-55 219.2 464 40.5
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 8.1e-55 218.8 418 41.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.1e-54 216.9 421 41.8
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.2e-53 214.9 418 41.6
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.6e-53 213.8 406 41.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.4e-53 213.4 422 40.5
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 4.4e-53 213.0 410 40.5
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.8e-53 212.6 411 43.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.8e-52 209.9 411 39.4
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 8.4e-52 208.8 285 50.5
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.2e-51 206.8 416 41.1
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.2e-51 206.5 415 39.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 7.1e-51 205.7 397 40.3
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 4.6e-50 203.0 428 39.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.8e-50 202.2 412 39.8
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.0e-49 200.3 408 40.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 5.1e-49 199.5 409 40.3
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-48 198.4 427 38.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-48 198.4 427 39.1
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.5e-48 197.2 426 40.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 3.3e-48 196.8 407 39.8
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.3e-48 196.4 427 38.9
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 4.3e-48 196.4 426 38.0
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 7.3e-48 195.7 427 38.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.2e-47 194.9 417 38.1
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.2e-47 194.9 350 42.0
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.6e-47 194.5 418 38.5
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.6e-47 193.4 418 39.7
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 8.1e-47 192.2 419 37.9
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.8e-46 191.0 423 38.1
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.1e-46 190.3 194 59.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-46 190.3 418 39.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 4.0e-46 189.9 421 37.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 3.4e-45 186.8 352 40.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 3.4e-45 186.8 257 47.1
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.3e-44 184.9 421 36.8
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 4.9e-44 183.0 178 61.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.1e-43 181.8 418 38.0
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.9e-43 181.0 338 44.4
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 3.2e-43 180.3 414 38.4
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.4e-43 179.5 444 37.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 4.6e-42 176.4 428 37.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.6e-42 176.4 389 38.6
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-41 174.9 277 45.8
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 5.1e-41 172.9 393 38.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 8.7e-41 172.2 357 39.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 3.3e-40 170.2 413 36.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 5.6e-40 169.5 420 37.4
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.3e-39 168.3 407 36.6
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.8e-39 167.2 422 35.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-38 165.2 206 50.5
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.8e-38 164.5 418 34.2
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.4e-38 164.1 413 35.8
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.4e-38 164.1 412 35.2
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.0e-37 161.0 237 46.8
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.6e-37 160.6 200 51.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.4e-37 160.2 180 55.0
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 3.8e-36 156.8 420 36.2
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.8e-36 156.8 423 36.4
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 6.4e-36 156.0 154 60.4
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.9e-35 154.5 401 35.7
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.4e-35 154.1 340 37.9
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.2e-34 151.8 414 35.7
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.6e-34 151.4 409 35.2
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.5e-32 144.8 346 37.6
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 4.3e-32 143.3 414 34.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.6e-31 141.4 412 34.7
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.8e-31 140.6 438 32.6
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 8.1e-31 139.0 194 48.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.4e-30 138.3 408 33.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 4.0e-30 136.7 422 34.1
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.3e-28 131.7 377 33.7
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.7e-28 131.3 175 51.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.9e-28 130.6 421 33.3
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-23 115.2 246 38.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 2.4e-22 110.9 186 36.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 6.9e-22 109.4 420 30.2
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.5e-21 106.7 415 27.5
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.0e-20 105.5 152 42.8
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.3e-20 105.1 429 29.8
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.7e-20 104.8 336 32.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.5e-19 100.9 433 31.2
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.3e-17 95.1 193 35.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.1e-17 93.2 389 30.3
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 8.7e-17 92.4 407 30.2
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.1e-16 92.0 393 29.3
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.5e-16 90.9 389 30.1
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-16 90.5 108 53.7
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 4.3e-16 90.1 410 29.3
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.7e-16 89.7 389 29.0
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.3e-15 88.6 153 42.5
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.8e-15 87.4 175 41.7
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.8e-15 87.4 406 27.3
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 8.2e-15 85.9 164 43.9
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.0e-13 81.3 388 28.9
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.3e-09 67.8 112 44.6
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.7e-07 60.5 66 50.0


User provided reference genes

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