Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 2.0e-194 682.2 319 100.0
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 1.4e-104 383.6 235 77.0
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 3.2e-104 382.5 220 81.4
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 9.3e-104 380.9 227 79.7
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 1.2e-103 380.6 227 79.3
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 2.1e-103 379.8 227 78.9
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 2.1e-103 379.8 227 78.9
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 3.5e-103 379.0 227 78.9
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 1.3e-102 377.1 227 78.4
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 1.3e-102 377.1 227 78.4
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 1.3e-102 377.1 227 78.4
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 2.3e-102 376.3 227 78.0
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 2.3e-102 376.3 227 78.0
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 2.3e-102 376.3 227 78.9
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 5.1e-102 375.2 227 77.5
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 5.1e-102 375.2 227 78.9
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 6.7e-102 374.8 227 78.0
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 1.1e-101 374.0 226 77.9
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 2.5e-101 372.9 209 83.7
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 1.3e-100 370.5 220 80.5
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 3.7e-100 369.0 212 82.5
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 4.8e-100 368.6 212 81.1
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 6.2e-100 368.2 212 81.6
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 1.4e-99 367.1 226 76.5
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 1.8e-99 366.7 227 75.8
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 4.0e-99 365.5 226 76.5
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 4.0e-99 365.5 212 81.6
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 5.3e-99 365.2 217 78.3
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 6.9e-99 364.8 227 76.7
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 9.0e-99 364.4 209 82.3
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 1.2e-98 364.0 212 81.1
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 2.0e-98 363.2 227 76.7
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 2.6e-98 362.8 211 81.0
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 4.5e-98 362.1 226 75.7
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 5.8e-98 361.7 211 80.1
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 5.8e-98 361.7 226 75.7
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 5.8e-98 361.7 226 75.2
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 5.8e-98 361.7 226 75.2
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 7.6e-98 361.3 212 80.2
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 1.0e-97 360.9 212 80.7
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 1.3e-97 360.5 212 79.7
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 1.3e-97 360.5 227 74.4
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 1.3e-97 360.5 212 79.2
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 2.2e-97 359.8 232 74.6
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 2.2e-97 359.8 226 76.1
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 2.9e-97 359.4 226 74.8
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 2.9e-97 359.4 212 79.7
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 2.9e-97 359.4 226 75.7
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 3.8e-97 359.0 228 75.0
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 3.8e-97 359.0 212 78.8
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 4.9e-97 358.6 212 79.2
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 4.9e-97 358.6 249 70.7
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 4.9e-97 358.6 227 74.0
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 6.5e-97 358.2 226 75.2
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 6.5e-97 358.2 226 74.8
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 6.5e-97 358.2 225 76.9
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 6.5e-97 358.2 227 73.1
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 8.4e-97 357.8 211 79.1
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 1.1e-96 357.5 219 76.3
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 1.1e-96 357.5 212 78.8
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 1.4e-96 357.1 212 79.2
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 1.4e-96 357.1 227 74.4
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 1.4e-96 357.1 227 74.9
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 1.9e-96 356.7 212 78.8
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 2.5e-96 356.3 227 73.1
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 3.2e-96 355.9 219 76.7
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 3.2e-96 355.9 219 76.7
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 4.2e-96 355.5 212 77.4
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 5.5e-96 355.1 209 80.4
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 5.5e-96 355.1 211 79.1
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 1.2e-95 354.0 211 78.2
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 1.6e-95 353.6 219 75.8
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.6e-95 353.6 226 73.5
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 1.6e-95 353.6 226 74.3
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 2.7e-95 352.8 226 73.5
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 2.7e-95 352.8 226 73.5
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 2.7e-95 352.8 209 78.5
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 1.0e-94 350.9 247 68.0
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 1.3e-94 350.5 214 76.6
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.3e-94 350.5 219 74.4
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.8e-94 350.1 224 73.2
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 2.3e-94 349.7 226 73.0
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 3.0e-94 349.4 226 72.6
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 8.7e-94 347.8 211 76.8
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 1.1e-93 347.4 227 72.7
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 1.5e-93 347.1 211 76.8
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 4.3e-93 345.5 212 75.9
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 4.3e-93 345.5 212 75.9
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 2.1e-92 343.2 212 75.5
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 2.1e-92 343.2 212 75.5
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 2.1e-92 343.2 212 75.0
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 4.5e-90 335.5 225 69.3
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 4.3e-85 318.9 226 65.5
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 2.8e-84 316.2 225 64.9
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 2.8e-84 316.2 209 70.3
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 2.8e-84 316.2 212 69.3
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 4.8e-84 315.5 225 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 2.7e-79 299.7 210 63.8
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 3.9e-78 295.8 215 64.7
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 1.1e-77 294.3 194 70.1
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 5.9e-74 282.0 213 59.2
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 8.5e-73 278.1 184 72.3
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 3.2e-72 276.2 227 62.1
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 7.2e-72 275.0 211 59.7
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 2.3e-70 270.0 164 80.5
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 1.7e-68 263.8 226 58.8
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 5.0e-57 225.7 131 77.9
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 8.0e-55 218.4 122 82.0
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 4.5e-50 202.6 223 46.2
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 8.0e-47 191.8 224 43.3
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 4.9e-44 182.6 220 41.4
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 8.3e-44 181.8 88 92.0
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 8.3e-44 181.8 88 92.0
COL.COLO4_34727 Corchorus olitorius HOM05D004751 ORTHO05D005819 1.0e-38 164.9 81 93.8
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 1.3e-36 157.9 91 76.9
Ah.09g230490 Amaranthus hybridus HOM05D004751 ORTHO05D005819 8.3e-36 155.2 80 88.8
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 7.0e-35 152.1 73 89.0
A09p40550 Brassica napus HOM05D004751 ORTHO05D005819 5.0e-33 146.0 70 91.4
BraA09t39552Z Brassica rapa HOM05D004751 ORTHO05D005819 5.0e-33 146.0 70 91.4
CDE06G0341 Ceratophyllum demersum HOM05D004751 ORTHO05D008828 1.5e-29 134.4 67 86.6
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 1.2e-26 124.8 72 76.4
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 2.5e-24 117.1 57 86.0
C09p03160 Brassica napus HOM05D004751 ORTHO05D005819 4.3e-24 116.3 88 67.0
CDE12G0100 Ceratophyllum demersum HOM05D000087 ORTHO05D016004 2.8e-15 87.0 139 39.6
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 1.8e-14 84.3 69 58.0
CiPaw.04G155500 Carya illinoinensis HOM05D004751 ORTHO05D005819 3.0e-09 67.0 62 54.8
Lj6g0025771 Lotus japonicus HOM05D000431 ORTHO05D000364 7.3e-08 62.4 188 29.8
Lsat_1_v5_gn_4_143260 Lactuca sativa HOM05D000431 ORTHO05D000364 9.6e-08 62.0 198 29.3
BraA03t09744Z Brassica rapa HOM05D000431 ORTHO05D000364 1.6e-07 61.2 199 29.6
Lj3g0008757 Lotus japonicus HOM05D000431 ORTHO05D000364 1.6e-07 61.2 146 33.6
Sed0004922 Sechium edule HOM05D000055 ORTHO05D002081 3.6e-07 60.1 256 24.6
BcaB01g05652 Brassica carinata HOM05D000431 ORTHO05D000364 4.7e-07 59.7 198 29.8
A03p04010 Brassica napus HOM05D000431 ORTHO05D000364 4.7e-07 59.7 198 29.3
C03p04480 Brassica napus HOM05D000431 ORTHO05D000364 4.7e-07 59.7 198 29.8
BolC3t12979H Brassica oleracea HOM05D000431 ORTHO05D000364 4.7e-07 59.7 198 29.8
FAN02G2025 Fragaria x ananassa HOM05D000059 ORTHO05D002665 4.7e-07 59.7 170 31.2
VMungo0647G1969 Vigna mungo HOM05D004751 ORTHO05D005819 4.7e-07 59.7 41 70.7
Solyc05g056550.3 Solanum lycopersicum HOM05D000431 ORTHO05D000364 6.2e-07 59.3 203 29.6
Sopen05g034950 Solanum pennellii HOM05D000431 ORTHO05D000364 6.2e-07 59.3 203 29.6
PGSC0003DMG400023441 Solanum tuberosum HOM05D000431 ORTHO05D000364 6.2e-07 59.3 203 29.6
CAN.G305.37 Capsicum annuum HOM05D000055 ORTHO05D000057 8.1e-07 58.9 160 28.8
FvH4_6g02090 Fragaria vesca HOM05D000059 ORTHO05D002665 8.1e-07 58.9 170 31.2
C08p52670 Brassica napus HOM05D000084 ORTHO05D008076 1.1e-06 58.5 161 27.3
Cc03_g05470 Coffea canephora HOM05D000059 ORTHO05D002665 1.1e-06 58.5 163 28.8
MELO3C006426.2 Cucumis melo HOM05D000059 ORTHO05D002665 1.1e-06 58.5 164 28.7
CsaV3_3G012120 Cucumis sativus L. HOM05D000059 ORTHO05D002665 1.1e-06 58.5 164 29.3
BolC8t52793H Brassica oleracea HOM05D000084 ORTHO05D008076 1.4e-06 58.2 161 27.3
AUR62031603 Chenopodium quinoa HOM05D000055 ORTHO05D000057 1.8e-06 57.8 155 28.4
AUR62012477 Chenopodium quinoa HOM05D000055 ORTHO05D000057 2.4e-06 57.4 155 28.4
Gohir.A06G181000 Gossypium hirsutum HOM05D000055 ORTHO05D000057 2.4e-06 57.4 174 27.6
Gorai.010G220100 Gossypium raimondii HOM05D000055 ORTHO05D000057 2.4e-06 57.4 174 27.6
Nitab4.5_0002916g0030 Nicotiana tabacum HOM05D000059 ORTHO05D002665 2.4e-06 57.4 166 30.1
Peaxi162Scf00579g00064 Petunia axillaris HOM05D000059 ORTHO05D002665 2.4e-06 57.4 161 28.0
TPR.G26487 Trifolium pratense HOM05D000055 ORTHO05D000057 2.4e-06 57.4 157 28.0
EL10Ac2g04118 Beta vulgaris HOM05D000055 ORTHO05D000057 3.1e-06 57.0 153 28.8
Thhalv10028618m.g Eutrema salsugineum HOM05D000059 ORTHO05D195856 3.1e-06 57.0 187 24.6
Nitab4.5_0018681g0010 Nicotiana tabacum HOM05D000059 ORTHO05D002665 3.1e-06 57.0 90 36.7
Prupe.6G349100 Prunus persica HOM05D000059 ORTHO05D002665 3.1e-06 57.0 163 32.5
Medtr1g080020 Medicago truncatula HOM05D000059 ORTHO05D002665 4.0e-06 56.6 162 31.5
Potri.010G002500 Populus trichocarpa HOM05D000055 ORTHO05D000057 4.0e-06 56.6 226 27.0
Hund16311 Selenicereus undatus HOM05D000431 ORTHO05D000364 4.0e-06 56.6 198 25.8
Solyc09g090090.2 Solanum lycopersicum HOM05D000059 ORTHO05D002665 4.0e-06 56.6 165 27.3
unitig_32.g11106 Utricularia gibba HOM05D000055 ORTHO05D000057 4.0e-06 56.6 227 25.1
Glyma.03G251400 Glycine max HOM05D000059 ORTHO05D002665 5.2e-06 56.2 160 30.6
ClCG05G004340 Citrullus lanatus HOM05D000059 ORTHO05D002665 6.8e-06 55.8 164 26.2
Oeu059145.1 Olea europaea HOM05D000059 ORTHO05D002665 6.8e-06 55.8 108 30.6
TPR.G22323 Trifolium pratense HOM05D000059 ORTHO05D002665 6.8e-06 55.8 172 32.6
Migut.N00268 Erythranthe guttata HOM05D000059 ORTHO05D002665 8.9e-06 55.5 82 29.3
Lj5A232T97 Lonicera japonica HOM05D000059 ORTHO05D004122 8.9e-06 55.5 160 27.5
Lj6g0013243 Lotus japonicus HOM05D000055 ORTHO05D000057 8.9e-06 55.5 159 27.0
PGSC0003DMG400027149 Solanum tuberosum HOM05D000055 ORTHO05D000057 8.9e-06 55.5 160 27.5
SGA_v2.0_scaffold308G48085 Striga asiatica HOM05D000059 ORTHO05D002665 8.9e-06 55.5 77 36.4


User provided reference genes

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