Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 6.2e-67 257.3 128 100.0
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.8e-24 115.2 107 58.9
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-23 112.5 73 69.9
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.2e-23 111.7 67 77.6
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 4.2e-23 111.7 78 64.1
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.2e-22 110.2 67 73.1
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.2e-22 110.2 67 73.1
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.6e-22 109.8 67 73.1
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.1e-22 109.4 67 74.6
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 2.7e-22 109.0 67 74.6
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 3.6e-22 108.6 68 72.1
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 3.6e-22 108.6 67 71.6
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 4.7e-22 108.2 74 64.9
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 4.7e-22 108.2 67 73.1
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 4.7e-22 108.2 67 73.1
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 4.7e-22 108.2 67 74.6
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 70.1
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 70.1
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 70.1
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 70.1
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 73.1
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 6.1e-22 107.8 65 72.3
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 6.1e-22 107.8 67 73.1
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 8.0e-22 107.5 65 75.4
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 8.0e-22 107.5 65 75.4
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.0e-22 107.5 65 75.4
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 8.0e-22 107.5 67 71.6
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 8.0e-22 107.5 65 73.8
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 8.0e-22 107.5 65 72.3
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.0e-21 107.1 67 71.6
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 1.4e-21 106.7 65 75.4
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-21 106.3 65 73.8
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-21 106.3 65 73.8
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-21 106.3 65 73.8
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.8e-21 106.3 67 73.1
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.8e-21 106.3 68 70.6
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.8e-21 106.3 67 70.1
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 2.3e-21 105.9 65 73.8
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 2.3e-21 105.9 67 70.1
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.3e-21 105.9 67 71.6
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 3.0e-21 105.5 67 68.7
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 3.0e-21 105.5 65 70.8
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 4.0e-21 105.1 67 70.1
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 4.0e-21 105.1 65 70.8
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 4.0e-21 105.1 65 70.8
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 4.0e-21 105.1 65 72.3
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 5.2e-21 104.8 67 71.6
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.2e-21 104.8 67 71.6
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 5.2e-21 104.8 65 73.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 6.7e-21 104.4 67 70.1
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 6.7e-21 104.4 65 70.8
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 6.7e-21 104.4 65 70.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 8.8e-21 104.0 67 68.7
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.8e-21 104.0 65 72.3
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 8.8e-21 104.0 65 70.8
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 1.1e-20 103.6 65 70.8
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.1e-20 103.6 65 73.8
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.5e-20 103.2 65 67.7
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 1.5e-20 103.2 67 65.7
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 1.5e-20 103.2 67 67.2
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 1.5e-20 103.2 67 67.2
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.5e-20 103.2 65 73.8
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 2.0e-20 102.8 67 65.7
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.0e-20 102.8 67 68.7
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 2.0e-20 102.8 67 67.2
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 2.6e-20 102.4 65 67.7
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.6e-20 102.4 65 69.2
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 2.6e-20 102.4 67 67.2
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 2.6e-20 102.4 67 67.2
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 2.6e-20 102.4 67 70.1
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 2.6e-20 102.4 65 70.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 2.6e-20 102.4 65 72.3
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 3.3e-20 102.1 63 71.4
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 3.3e-20 102.1 65 67.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 3.3e-20 102.1 65 70.8
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 3.3e-20 102.1 68 66.2
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 4.4e-20 101.7 65 64.6
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 4.4e-20 101.7 67 64.2
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 4.4e-20 101.7 67 64.2
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 4.4e-20 101.7 67 67.2
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 5.7e-20 101.3 65 64.6
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 5.7e-20 101.3 67 68.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 5.7e-20 101.3 65 69.2
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 7.4e-20 100.9 65 66.2
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 7.4e-20 100.9 65 70.8
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 7.4e-20 100.9 67 65.7
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 7.4e-20 100.9 67 67.2
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 9.7e-20 100.5 67 67.2
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 9.7e-20 100.5 67 64.2
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 9.7e-20 100.5 67 67.2
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 9.7e-20 100.5 67 67.2
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 1.3e-19 100.1 70 68.6
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.3e-19 100.1 67 62.7
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 1.3e-19 100.1 65 72.3
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.3e-19 100.1 65 72.3
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.3e-19 100.1 65 72.3
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.3e-19 100.1 65 72.3
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.7e-19 99.8 65 69.2
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.7e-19 99.8 67 65.7
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.7e-19 99.8 67 65.7
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 2.2e-19 99.4 67 67.2
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.8e-19 99.0 66 65.2
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 2.8e-19 99.0 65 72.3
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 2.8e-19 99.0 62 69.4
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 3.7e-19 98.6 67 62.7
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.8e-19 98.2 67 64.2
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 6.3e-19 97.8 67 65.7
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 6.3e-19 97.8 67 65.7
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 8.2e-19 97.4 62 69.4
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 8.2e-19 97.4 67 67.2
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.1e-18 97.1 67 65.7
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.1e-18 97.1 67 65.7
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.1e-18 97.1 67 65.7
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 2.4e-18 95.9 67 64.2
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 4.1e-18 95.1 67 64.2
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 4.1e-18 95.1 63 66.7
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 4.1e-18 95.1 65 60.0
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 5.3e-18 94.7 62 71.0
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 5.3e-18 94.7 67 62.7
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 7.0e-18 94.4 68 64.7
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 9.1e-18 94.0 88 54.5
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 9.1e-18 94.0 65 60.0
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.6e-17 93.2 67 62.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 2.0e-17 92.8 67 58.2
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 2.6e-17 92.4 75 56.0
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 4.5e-17 91.7 62 64.5
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 5.0e-16 88.2 70 61.4
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 7.2e-15 84.3 119 40.3
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 2.1e-14 82.8 73 56.2
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 2.7e-14 82.4 65 52.3
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 8.8e-13 77.4 58 62.1
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 8.8e-13 77.4 54 66.7
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.2e-12 77.0 42 78.6
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.6e-12 75.9 63 50.8
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 9.8e-12 73.9 45 75.6
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 3.1e-10 68.9 65 46.2
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 7.0e-10 67.8 42 71.4
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 7.0e-10 67.8 40 72.5
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 3.5e-09 65.5 38 78.9
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 4.5e-09 65.1 40 72.5
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.8e-08 62.0 36 72.2
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.1e-07 60.5 36 72.2
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 2.5e-07 59.3 36 66.7
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 3.2e-07 58.9 36 63.9
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 7.2e-07 57.8 63 41.3
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 1.6e-06 56.6 58 46.6


User provided reference genes

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