Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 2.5e-192 675.2 333 100.0
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 8.7e-20 102.1 52 94.2
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.5e-19 101.3 59 84.7
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.6e-18 97.8 52 90.4
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 2.1e-18 97.4 52 90.4
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 2.8e-18 97.1 52 90.4
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 2.8e-18 97.1 52 90.4
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.7e-18 96.7 52 90.4
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 3.7e-18 96.7 52 90.4
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 1.1e-17 95.1 52 90.4
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 1.4e-17 94.7 52 86.5
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.8e-17 94.4 52 88.5
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.8e-17 94.4 52 88.5
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.8e-17 94.4 52 88.5
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 2.4e-17 94.0 52 86.5
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 2.4e-17 94.0 51 88.2
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 3.1e-17 93.6 52 86.5
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 3.1e-17 93.6 52 86.5
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 3.1e-17 93.6 52 86.5
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.1e-17 93.6 52 88.5
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.1e-17 93.6 52 88.5
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 4.0e-17 93.2 52 86.5
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 4.0e-17 93.2 52 84.6
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 5.3e-17 92.8 52 86.5
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 5.3e-17 92.8 52 84.6
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 6.9e-17 92.4 52 84.6
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 9.0e-17 92.0 52 82.7
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 9.0e-17 92.0 58 72.4
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.2e-16 91.7 52 86.5
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.2e-16 91.7 52 84.6
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 1.2e-16 91.7 52 86.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 1.5e-16 91.3 52 86.5
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.5e-16 91.3 53 83.0
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.5e-16 91.3 52 84.6
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 1.5e-16 91.3 52 84.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.5e-16 91.3 52 84.6
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 2.0e-16 90.9 54 79.6
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 2.0e-16 90.9 52 86.5
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.0e-16 90.9 52 86.5
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.0e-16 90.9 52 86.5
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.0e-16 90.9 52 86.5
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 2.6e-16 90.5 52 80.8
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.6e-16 90.5 60 71.7
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 3.4e-16 90.1 52 82.7
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 3.4e-16 90.1 54 81.5
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 82.7
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 82.7
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 82.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 82.7
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 86.5
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 82.7
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 80.8
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 4.5e-16 89.7 52 80.8
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 4.5e-16 89.7 54 79.6
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 5.8e-16 89.4 52 84.6
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 5.8e-16 89.4 52 84.6
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 5.8e-16 89.4 54 74.1
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 5.8e-16 89.4 52 80.8
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 7.6e-16 89.0 54 79.6
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 7.6e-16 89.0 52 82.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 7.6e-16 89.0 52 82.7
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.0e-15 88.6 52 82.7
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 78.8
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 78.8
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 82.7
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 80.8
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 82.7
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 82.7
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.7e-15 87.8 52 82.7
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 2.9e-15 87.0 52 80.8
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 2.9e-15 87.0 52 80.8
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 2.9e-15 87.0 52 78.8
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.9e-15 87.0 54 70.4
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.9e-15 87.0 54 70.4
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.8e-15 86.7 52 78.8
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 3.8e-15 86.7 58 70.7
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 3.8e-15 86.7 52 82.7
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.9e-15 86.3 52 80.8
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 4.9e-15 86.3 52 80.8
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 4.9e-15 86.3 52 80.8
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 6.5e-15 85.9 52 80.8
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 6.5e-15 85.9 52 78.8
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 8.4e-15 85.5 52 76.9
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 8.4e-15 85.5 52 76.9
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.1e-14 85.1 52 80.8
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.1e-14 85.1 52 80.8
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 1.1e-14 85.1 52 80.8
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.4e-14 84.7 52 75.0
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.4e-14 84.7 87 51.7
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 1.9e-14 84.3 52 76.9
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.9e-14 84.3 52 78.8
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.9e-14 84.3 52 78.8
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.9e-14 84.3 51 76.5
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.9e-14 84.3 54 70.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.5e-14 84.0 52 78.8
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 2.5e-14 84.0 52 76.9
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.5e-14 84.0 80 57.5
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.5e-14 84.0 52 75.0
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.2e-14 83.6 52 75.0
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.2e-14 83.6 52 75.0
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 3.2e-14 83.6 52 73.1
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 3.2e-14 83.6 51 76.5
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 3.2e-14 83.6 52 78.8
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 3.2e-14 83.6 52 78.8
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 4.2e-14 83.2 52 78.8
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 4.2e-14 83.2 52 78.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 4.2e-14 83.2 52 78.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 4.2e-14 83.2 52 78.8
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 5.5e-14 82.8 52 73.1
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 7.1e-14 82.4 52 76.9
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 7.1e-14 82.4 52 76.9
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 7.1e-14 82.4 52 76.9
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 7.1e-14 82.4 52 76.9
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 7.1e-14 82.4 52 75.0
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 7.1e-14 82.4 47 80.9
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 9.3e-14 82.0 52 73.1
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 9.3e-14 82.0 52 75.0
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.2e-13 81.6 49 79.6
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.2e-13 81.6 54 68.5
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.2e-13 81.6 52 76.9
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.6e-13 81.3 52 76.9
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.1e-13 80.9 52 75.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 2.1e-13 80.9 52 75.0
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 3.5e-13 80.1 63 60.3
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.5e-13 80.1 52 73.1
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 6.0e-13 79.3 52 73.1
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 7.9e-13 79.0 52 69.2
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 7.9e-13 79.0 52 75.0
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 1.8e-12 77.8 52 73.1
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 2.3e-12 77.4 54 68.5
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.3e-12 77.4 43 83.7
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.0e-12 77.0 52 71.2
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.0e-12 77.0 52 69.2
SHI27651 Sapria himalayana HOM05D058262 ORTHO05D050808 3.0e-12 77.0 53 75.5
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 8.7e-12 75.5 43 83.7
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 1.1e-11 75.1 74 55.4
SHI04610 Sapria himalayana HOM05D058262 ORTHO05D364653 1.1e-11 75.1 57 68.4
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 2.5e-11 73.9 44 75.0
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.5e-11 73.9 52 69.2
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.5e-11 73.9 63 60.3
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 4.3e-11 73.2 46 73.9
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 7.4e-11 72.4 42 83.3
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 7.4e-11 72.4 43 81.4
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 7.4e-11 72.4 54 63.0
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 9.6e-11 72.0 47 70.2
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 9.6e-11 72.0 51 64.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.8e-10 70.5 47 70.2
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 6.2e-10 69.3 46 69.6
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.4e-09 68.2 47 66.0
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 1.4e-09 68.2 47 66.0
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 4.1e-09 66.6 53 60.4
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 4.1e-09 66.6 53 60.4
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 6.9e-09 65.9 52 61.5
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 9.0e-09 65.5 47 63.8
SHI34553 Sapria himalayana HOM05D000105 ORTHO05D368868 2.0e-08 64.3 65 49.2


User provided reference genes

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