Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 1.2e-71 273.1 138 100.0
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 6.4e-17 91.3 111 48.6
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.1e-16 90.5 60 76.7
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.1e-16 90.5 109 47.7
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.9e-16 89.7 111 45.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 3.2e-16 89.0 106 49.1
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.2e-16 89.0 116 44.8
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 4.1e-16 88.6 60 76.7
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 4.1e-16 88.6 59 76.3
SHI10991 Sapria himalayana HOM05D000002 ORTHO05D004005 5.4e-16 88.2 52 80.8
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 7.0e-16 87.8 61 72.1
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 7.0e-16 87.8 60 76.7
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 7.0e-16 87.8 99 50.5
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 7.0e-16 87.8 60 75.0
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 9.2e-16 87.4 60 75.0
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 9.2e-16 87.4 60 75.0
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.2e-15 87.0 81 59.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.2e-15 87.0 52 84.6
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.2e-15 87.0 106 44.3
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.6e-15 86.7 60 75.0
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.6e-15 86.7 107 45.8
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 1.6e-15 86.7 60 75.0
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.6e-15 86.7 60 75.0
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.6e-15 86.7 52 82.7
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 2.0e-15 86.3 96 51.0
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.0e-15 86.3 100 51.0
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.0e-15 86.3 61 72.1
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 2.0e-15 86.3 52 82.7
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 2.0e-15 86.3 60 73.3
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.0e-15 86.3 60 73.3
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 2.7e-15 85.9 52 80.8
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.7e-15 85.9 52 80.8
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 2.7e-15 85.9 60 73.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 2.7e-15 85.9 60 71.7
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 2.7e-15 85.9 52 80.8
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 3.5e-15 85.5 60 73.3
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 3.5e-15 85.5 52 80.8
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 3.5e-15 85.5 83 55.4
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 3.5e-15 85.5 52 82.7
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.5e-15 85.5 52 82.7
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 82.7
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 80.8
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 82.7
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 82.7
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 4.6e-15 85.1 108 42.6
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 80.8
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 80.8
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 4.6e-15 85.1 52 82.7
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.0e-15 84.7 60 71.7
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 6.0e-15 84.7 52 80.8
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 7.8e-15 84.3 60 71.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 7.8e-15 84.3 108 42.6
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 7.8e-15 84.3 52 78.8
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.8e-15 84.3 96 50.0
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.0e-14 84.0 52 76.9
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.0e-14 84.0 123 42.3
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.3e-14 83.6 52 78.8
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.3e-14 83.6 52 78.8
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.3e-14 83.6 52 78.8
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.3e-14 83.6 52 76.9
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.3e-14 83.6 52 76.9
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 1.7e-14 83.2 52 78.8
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 1.7e-14 83.2 60 70.0
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.7e-14 83.2 52 76.9
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.7e-14 83.2 54 74.1
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.7e-14 83.2 59 67.8
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.7e-14 83.2 100 49.0
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.3e-14 82.8 52 76.9
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.3e-14 82.8 52 78.8
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.3e-14 82.8 52 78.8
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 3.0e-14 82.4 52 76.9
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 3.0e-14 82.4 52 76.9
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 3.0e-14 82.4 60 71.7
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.9e-14 82.0 60 66.7
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 3.9e-14 82.0 60 68.3
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 3.9e-14 82.0 52 75.0
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.9e-14 82.0 52 76.9
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 5.0e-14 81.6 52 76.9
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 5.0e-14 81.6 52 76.9
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 5.0e-14 81.6 107 43.9
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 5.0e-14 81.6 62 66.1
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 6.6e-14 81.3 52 75.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.6e-14 81.3 52 75.0
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 6.6e-14 81.3 52 75.0
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 8.6e-14 80.9 52 76.9
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 8.6e-14 80.9 52 73.1
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 8.6e-14 80.9 95 48.4
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.1e-13 80.5 52 76.9
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 1.1e-13 80.5 107 45.8
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.1e-13 80.5 52 75.0
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 1.1e-13 80.5 52 75.0
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.5e-13 80.1 52 73.1
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 1.5e-13 80.1 52 73.1
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 1.9e-13 79.7 100 46.0
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.9e-13 79.7 60 70.0
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 2.5e-13 79.3 60 70.0
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.5e-13 79.3 52 73.1
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 2.5e-13 79.3 52 75.0
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 3.3e-13 79.0 52 75.0
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 3.3e-13 79.0 52 71.2
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 3.3e-13 79.0 52 71.2
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.3e-13 78.6 60 68.3
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 4.3e-13 78.6 60 68.3
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 4.3e-13 78.6 52 69.2
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 4.3e-13 78.6 52 71.2
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 4.3e-13 78.6 52 73.1
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 5.6e-13 78.2 60 68.3
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.6e-13 78.2 52 71.2
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 5.6e-13 78.2 52 71.2
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 7.3e-13 77.8 123 39.8
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 7.3e-13 77.8 52 71.2
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.5e-13 77.4 60 68.3
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 9.5e-13 77.4 52 69.2
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 1.2e-12 77.0 93 47.3
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 1.2e-12 77.0 93 47.3
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.2e-12 77.0 60 66.7
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 1.2e-12 77.0 52 73.1
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.6e-12 76.6 60 66.7
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.6e-12 76.6 60 66.7
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 1.6e-12 76.6 60 66.7
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.6e-12 76.6 60 66.7
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.6e-12 76.6 86 51.2
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.1e-12 76.3 60 65.0
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 2.1e-12 76.3 60 65.0
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 3.6e-12 75.5 60 70.0
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 3.6e-12 75.5 60 65.0
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 3.6e-12 75.5 100 44.0
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 8.1e-12 74.3 60 65.0
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 8.1e-12 74.3 100 43.0
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 1.4e-11 73.6 60 63.3
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 1.4e-11 73.6 60 63.3
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 1.4e-11 73.6 60 63.3
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.4e-11 73.6 52 67.3
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 1.8e-11 73.2 52 69.2
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 2.3e-11 72.8 48 72.9
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 2.3e-11 72.8 52 67.3
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 3.1e-11 72.4 52 65.4
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 4.0e-11 72.0 57 61.4
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 6.8e-11 71.2 60 58.3
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 6.8e-11 71.2 60 58.3
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 6.8e-11 71.2 52 67.3
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 1.2e-10 70.5 52 65.4
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.5e-10 70.1 52 61.5
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 1.5e-10 70.1 52 65.4
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 5.8e-10 68.2 63 58.7
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.8e-10 68.2 48 66.7
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 1.7e-09 66.6 45 73.3
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 3.7e-09 65.5 54 63.0
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.4e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 4.6e-07 58.5 116 33.6
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 7.8e-07 57.8 53 52.8
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 3.0e-06 55.8 36 77.8
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 3.9e-06 55.5 58 50.0
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 3.9e-06 55.5 36 77.8
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 5.1e-06 55.1 34 82.4
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.1e-06 55.1 36 77.8


User provided reference genes

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