Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02535 Sapria himalayana HOM05D005983 ORTHO05D007438 2.8e-154 548.5 269 100.0
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 3.0e-10 70.1 87 44.8
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 1.1e-09 68.2 103 40.8
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 3.3e-09 66.6 59 57.6
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 3.3e-09 66.6 60 58.3
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 5.6e-09 65.9 60 58.3
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 5.6e-09 65.9 57 57.9
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 5.6e-09 65.9 57 57.9
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 7.3e-09 65.5 57 59.6
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 7.3e-09 65.5 85 43.5
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 7.3e-09 65.5 62 54.8
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 7.3e-09 65.5 62 54.8
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 7.3e-09 65.5 62 54.8
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 7.3e-09 65.5 80 42.5
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 9.5e-09 65.1 55 60.0
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.6e-08 64.3 53 60.4
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 2.1e-08 63.9 59 54.2
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 2.1e-08 63.9 62 53.2
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 2.8e-08 63.5 57 56.1
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 2.8e-08 63.5 62 50.0
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 2.8e-08 63.5 62 50.0
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 2.8e-08 63.5 59 54.2
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 2.8e-08 63.5 68 48.5
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 3.6e-08 63.2 63 47.6
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 3.6e-08 63.2 89 43.8
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 3.6e-08 63.2 89 43.8
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 3.6e-08 63.2 89 43.8
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 4.7e-08 62.8 59 54.2
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 6.2e-08 62.4 53 58.5
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 6.2e-08 62.4 99 41.4
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 8.1e-08 62.0 59 52.5
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 1.1e-07 61.6 57 52.6
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 1.4e-07 61.2 50 60.0
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 1.4e-07 61.2 57 50.9
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 1.8e-07 60.8 60 50.0
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.8e-07 60.8 53 56.6
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 1.8e-07 60.8 53 54.7
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 2.3e-07 60.5 71 46.5
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 2.3e-07 60.5 53 54.7
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 2.3e-07 60.5 71 47.9
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 2.3e-07 60.5 53 52.8
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 2.3e-07 60.5 57 50.9
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 2.3e-07 60.5 72 44.4
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 3.1e-07 60.1 69 46.4
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 3.1e-07 60.1 69 46.4
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 4.0e-07 59.7 62 50.0
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 4.0e-07 59.7 57 50.9
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 4.0e-07 59.7 52 53.8
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 4.0e-07 59.7 74 41.9
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 4.0e-07 59.7 68 48.5
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 4.0e-07 59.7 57 54.4
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 4.0e-07 59.7 61 49.2
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 5.2e-07 59.3 81 40.7
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 5.2e-07 59.3 85 42.4
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 5.2e-07 59.3 85 42.4
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 5.2e-07 59.3 53 52.8
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 6.8e-07 58.9 85 42.4
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.9e-07 58.5 62 50.0
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 8.9e-07 58.5 53 50.9
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 8.9e-07 58.5 53 50.9
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 8.9e-07 58.5 53 52.8
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 8.9e-07 58.5 87 41.4
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 1.2e-06 58.2 53 52.8
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 1.5e-06 57.8 57 50.9
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 1.5e-06 57.8 53 54.7
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 1.5e-06 57.8 53 50.9
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 1.5e-06 57.8 53 54.7
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 1.5e-06 57.8 50 56.0
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 2.0e-06 57.4 87 41.4
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 2.6e-06 57.0 60 50.0
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 2.6e-06 57.0 53 50.9
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 2.6e-06 57.0 53 52.8
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 3.4e-06 56.6 57 49.1
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 3.4e-06 56.6 57 49.1
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 3.4e-06 56.6 51 51.0
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 3.4e-06 56.6 62 46.8
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 3.4e-06 56.6 53 49.1
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 3.4e-06 56.6 53 52.8
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 4.4e-06 56.2 53 49.1
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 5.8e-06 55.8 57 45.6
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 5.8e-06 55.8 53 49.1
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 5.8e-06 55.8 69 43.5
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 5.8e-06 55.8 58 50.0
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 7.5e-06 55.5 53 49.1
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 9.9e-06 55.1 51 56.9
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 9.9e-06 55.1 50 56.0


User provided reference genes

Program Settings