Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02510 Sapria himalayana HOM05D006889 ORTHO05D008614 4.9e-66 254.2 120 100.0
Eucgr.K00107 Eucalyptus grandis HOM05D006889 ORTHO05D008614 1.4e-12 76.6 47 74.5
MBI14_g11688_MAGBIO Magnolia biondii HOM05D006889 ORTHO05D008614 5.4e-12 74.7 55 63.6
Prupe.2G323000 Prunus persica HOM05D006889 ORTHO05D008614 5.4e-12 74.7 47 74.5
Cpa.g.sc140.53 Carica papaya HOM05D006889 ORTHO05D008614 9.1e-12 73.9 37 89.2
Nn6g34807 Nelumbo nucifera HOM05D006889 ORTHO05D008614 1.2e-11 73.6 48 64.6
RcHm_v2.0_Chr1g0383401 Rosa chinensis HOM05D006889 ORTHO05D008614 1.2e-11 73.6 36 91.7
FvH4_7g33430 Fragaria vesca HOM05D006889 ORTHO05D008614 1.6e-11 73.2 36 88.9
FAN01G0055 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.6e-11 73.2 36 88.9
FAN03G0535 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.6e-11 73.2 36 88.9
FAN10G1689 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.6e-11 73.2 36 88.9
FAN10G2743 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.6e-11 73.2 36 88.9
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 2.0e-11 72.8 39 79.5
Haze_22241 Corylus avellana HOM05D006889 ORTHO05D008614 2.0e-11 72.8 47 70.2
Lalb_Chr13g0293181 Lupinus albus HOM05D006889 ORTHO05D008614 2.0e-11 72.8 39 84.6
MD07G1075300 Malus domestica HOM05D006889 ORTHO05D008614 2.0e-11 72.8 47 72.3
MD07G1304400 Malus domestica HOM05D006889 ORTHO05D008614 2.0e-11 72.8 47 72.3
Manes.09G119000 Manihot esculenta HOM05D006889 ORTHO05D008614 2.0e-11 72.8 37 86.5
EL10Ac8g18884 Beta vulgaris HOM05D006889 ORTHO05D008614 2.7e-11 72.4 48 66.7
PGSC0003DMG400025437 Solanum tuberosum HOM05D006889 ORTHO05D008614 2.7e-11 72.4 48 64.6
TAR369G0178 Trochodendron aralioides HOM05D006889 ORTHO05D008614 2.7e-11 72.4 48 66.7
vmacro10779 Vaccinium macrocarpon HOM05D006889 ORTHO05D008614 2.7e-11 72.4 55 63.6
Ciclev10012044m.g Citrus clementina HOM05D006889 ORTHO05D008614 3.5e-11 72.0 49 71.4
CDE08G0956 Ceratophyllum demersum HOM05D006889 ORTHO05D008614 4.5e-11 71.6 51 62.7
Atru.chr12.2063 Acer truncatum HOM05D006889 ORTHO05D008614 5.9e-11 71.2 36 86.1
QL09p026702 Quercus lobata HOM05D006889 ORTHO05D008614 5.9e-11 71.2 36 86.1
GSVIVG01024467001 Vitis vinifera HOM05D006889 ORTHO05D008614 5.9e-11 71.2 36 86.1
Aqoxy4G02722 Aquilegia oxysepala HOM05D006889 ORTHO05D008614 7.7e-11 70.9 37 83.8
Lj4g0013326 Lotus japonicus HOM05D006889 ORTHO05D008614 1.0e-10 70.5 36 88.9
Psat7g087400 Pisum sativum HOM05D006889 ORTHO05D008614 1.0e-10 70.5 37 86.5
CAN.G186.71 Capsicum annuum HOM05D006889 ORTHO05D008614 1.3e-10 70.1 48 60.4
Os08g0192400 Oryza sativa ssp. japonica HOM05D006889 ORTHO05D008614 1.3e-10 70.1 49 67.3
Solyc04g009830.3 Solanum lycopersicum HOM05D006889 ORTHO05D008614 1.3e-10 70.1 48 62.5
Aa31LG5G21960 Aethionema arabicum HOM05D006889 ORTHO05D008614 1.7e-10 69.7 52 67.3
Ca_18207_v3 Cicer arietinum L. HOM05D006889 ORTHO05D008614 1.7e-10 69.7 37 83.8
Dinv25463 Davidia involucrata HOM05D006889 ORTHO05D008614 1.7e-10 69.7 36 83.3
ECA238G0057 Erigeron canadensis HOM05D006889 ORTHO05D008614 1.7e-10 69.7 37 78.4
Oeu033252.2 Olea europaea HOM05D006889 ORTHO05D008614 1.7e-10 69.7 48 64.6
PSO339G0304 Papaver somniferum HOM05D006889 ORTHO05D008614 1.7e-10 69.7 36 83.3
PSO384G0326 Papaver somniferum HOM05D006889 ORTHO05D008614 1.7e-10 69.7 36 83.3
PGR142G0052 Punica granatum HOM05D006889 ORTHO05D008614 1.7e-10 69.7 38 78.9
SGA_v2.0_scaffold62G21307 Striga asiatica HOM05D006889 ORTHO05D008614 1.7e-10 69.7 39 82.1
CSS0010313 Camellia sinensis var. sinensis HOM05D006889 ORTHO05D008614 2.3e-10 69.3 36 83.3
Cc02_g09110 Coffea canephora HOM05D006889 ORTHO05D008614 2.3e-10 69.3 47 59.6
CsaV3_5G005080 Cucumis sativus L. HOM05D006889 ORTHO05D008614 2.3e-10 69.3 36 86.1
Migut.F00816 Erythranthe guttata HOM05D006889 ORTHO05D008614 2.3e-10 69.3 36 86.1
Thhalv10016833m.g Eutrema salsugineum HOM05D006889 ORTHO05D008614 2.3e-10 69.3 36 86.1
THA.LOC104805469 Tarenaya hassleriana HOM05D006889 ORTHO05D008614 2.3e-10 69.3 49 69.4
CiPaw.07G182100 Carya illinoinensis HOM05D006889 ORTHO05D008614 2.9e-10 68.9 36 83.3
AUR62028393 Chenopodium quinoa HOM05D006889 ORTHO05D008614 2.9e-10 68.9 47 61.7
Phvul.002G186100 Phaseolus vulgaris HOM05D006889 ORTHO05D008614 2.9e-10 68.9 39 76.9
Potri.001G412800 Populus trichocarpa HOM05D006889 ORTHO05D008614 2.9e-10 68.9 36 83.3
Sopen04g004970 Solanum pennellii HOM05D006889 ORTHO05D008614 2.9e-10 68.9 49 59.2
Thecc.06G017600 Theobroma cacao HOM05D006889 ORTHO05D008614 2.9e-10 68.9 36 83.3
A05p09120 Brassica napus HOM05D006889 ORTHO05D008614 3.8e-10 68.6 52 65.4
BraA05t19868Z Brassica rapa HOM05D006889 ORTHO05D008614 3.8e-10 68.6 52 65.4
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 3.8e-10 68.6 54 61.1
Sabra16G0274900 Salix brachista HOM05D006889 ORTHO05D008614 3.8e-10 68.6 37 78.4
AT2G36740 Arabidopsis thaliana HOM05D006889 ORTHO05D008614 5.0e-10 68.2 36 83.3
Carub.0004s1859 Capsella rubella HOM05D006889 ORTHO05D008614 5.0e-10 68.2 36 83.3
CARHR131100 Cardamine hirsuta HOM05D006889 ORTHO05D008614 5.0e-10 68.2 36 83.3
Sed0014561 Sechium edule HOM05D006889 ORTHO05D008614 5.0e-10 68.2 36 83.3
arahy.Tifrunner.gnm1.ann1.I4BD9U Arachis hypogaea HOM05D006889 ORTHO05D008614 6.6e-10 67.8 39 79.5
arahy.Tifrunner.gnm1.ann1.T52I9D Arachis hypogaea HOM05D006889 ORTHO05D008614 6.6e-10 67.8 39 79.5
SalBow3G4178 Salvia bowleyana HOM05D006889 ORTHO05D008614 6.6e-10 67.8 47 66.0
Hund18033 Selenicereus undatus HOM05D006889 ORTHO05D008614 6.6e-10 67.8 36 80.6
Ah.14g084260 Amaranthus hybridus HOM05D006889 ORTHO05D008614 1.1e-09 67.0 47 59.6
AL4G32960 Arabidopsis lyrata HOM05D006889 ORTHO05D008614 1.1e-09 67.0 36 80.6
BcaC02g11793 Brassica carinata HOM05D006889 ORTHO05D008614 1.1e-09 67.0 36 80.6
C04p11290 Brassica napus HOM05D006889 ORTHO05D008614 1.1e-09 67.0 36 80.6
BolC4t22767H Brassica oleracea HOM05D006889 ORTHO05D008614 1.1e-09 67.0 36 80.6
BolC4t22783H Brassica oleracea HOM05D006889 ORTHO05D008614 1.1e-09 67.0 36 80.6
MSTRG.4328 Avicennia marina HOM05D006889 ORTHO05D008614 1.5e-09 66.6 35 85.7
BcaB02g09334 Brassica carinata HOM05D006889 ORTHO05D008614 1.5e-09 66.6 36 80.6
Glyma.05G136000 Glycine max HOM05D006889 ORTHO05D008614 1.9e-09 66.2 39 76.9
Gohir.A06G144633 Gossypium hirsutum HOM05D006889 ORTHO05D008614 1.9e-09 66.2 36 80.6
Gohir.D06G150400 Gossypium hirsutum HOM05D006889 ORTHO05D008614 1.9e-09 66.2 36 80.6
Gorai.010G175600 Gossypium raimondii HOM05D006889 ORTHO05D008614 1.9e-09 66.2 36 80.6
HanXRQChr07g0200571 Helianthus annuus HOM05D006889 ORTHO05D008614 2.5e-09 65.9 36 77.8
TWI60G1635 Tripterygium wilfordii HOM05D006889 ORTHO05D008614 2.5e-09 65.9 35 77.1
SMO165G0047 Selaginella moellendorffii HOM05D006889 ORTHO05D008614 3.3e-09 65.5 50 56.0
SEGI_12666 Sequoiadendron giganteum HOM05D006889 ORTHO05D008614 3.3e-09 65.5 47 59.6
Sp4g19020 Schrenkiella parvula HOM05D006889 ORTHO05D008614 4.2e-09 65.1 35 80.0
unitig_747.g21800 Utricularia gibba HOM05D006889 ORTHO05D008614 5.5e-09 64.7 38 73.7
CBR_g38961 Chara braunii HOM05D006889 ORTHO05D008614 7.2e-09 64.3 38 71.1
DCAR_030020 Daucus carota HOM05D006889 ORTHO05D008614 1.6e-08 63.2 35 71.4
HPP92_000052 Vanilla planifolia HOM05D006889 ORTHO05D008614 1.6e-08 63.2 49 55.1
Mapoly0001s0482 Marchantia polymorpha HOM05D006889 ORTHO05D008614 2.1e-08 62.8 36 72.2
Sc08g0005450 Simmondsia chinensis HOM05D006889 ORTHO05D008614 2.1e-08 62.8 36 69.4
Hma1.2p1_0164F.1_g073300 Hydrangea macrophylla HOM05D006889 ORTHO05D008614 6.1e-08 61.2 36 72.2
ATR0081G022 Amborella trichopoda HOM05D006889 ORTHO05D008614 8.0e-08 60.8 35 80.0
Actinidia31405 Actinidia chinensis HOM05D006889 ORTHO05D008614 2.3e-07 59.3 34 73.5
Pp3c14_17650 Physcomitrium patens HOM05D006889 ORTHO05D008614 1.5e-06 56.6 36 66.7


User provided reference genes

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