Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 3.5e-48 194.5 90 100.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 1.4e-28 129.4 90 68.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 5.8e-27 124.0 90 68.9
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 1.3e-26 122.9 90 66.7
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 2.2e-26 122.1 90 67.8
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 2.2e-26 122.1 90 66.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.9e-26 121.7 90 67.8
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 3.7e-26 121.3 90 65.6
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 6.4e-26 120.6 90 67.8
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 8.3e-26 120.2 90 66.7
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.3e-26 120.2 90 66.7
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 8.3e-26 120.2 90 63.3
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 1.4e-25 119.4 90 64.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 1.9e-25 119.0 90 64.4
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 2.4e-25 118.6 90 63.3
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 2.4e-25 118.6 90 66.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.2e-25 118.2 90 64.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 4.1e-25 117.9 90 64.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 5.4e-25 117.5 90 64.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 5.4e-25 117.5 89 60.7
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 7.1e-25 117.1 90 62.2
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 7.1e-25 117.1 90 64.4
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 9.2e-25 116.7 90 62.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 9.2e-25 116.7 90 64.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 9.2e-25 116.7 90 61.1
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 9.2e-25 116.7 90 65.6
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 9.2e-25 116.7 90 61.1
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 1.2e-24 116.3 90 63.3
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 1.2e-24 116.3 89 62.9
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 2.1e-24 115.5 90 63.3
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 2.7e-24 115.2 90 62.2
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 3.5e-24 114.8 90 64.4
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 3.5e-24 114.8 90 61.1
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 3.5e-24 114.8 90 63.3
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 4.6e-24 114.4 89 60.7
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 6.0e-24 114.0 90 63.3
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 7.8e-24 113.6 90 61.1
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 1.0e-23 113.2 90 63.3
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 1.0e-23 113.2 90 61.1
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 1.0e-23 113.2 90 61.1
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 1.0e-23 113.2 90 61.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.3e-23 112.8 90 63.3
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 1.3e-23 112.8 90 60.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 1.3e-23 112.8 90 62.2
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 1.3e-23 112.8 90 64.4
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 1.3e-23 112.8 89 61.8
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 1.7e-23 112.5 90 61.1
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 2.3e-23 112.1 90 61.1
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.3e-23 112.1 90 60.0
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 2.3e-23 112.1 90 62.2
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 2.3e-23 112.1 90 57.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 2.3e-23 112.1 90 61.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.0e-23 111.7 90 58.9
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 3.0e-23 111.7 90 62.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 3.9e-23 111.3 90 60.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 5.1e-23 110.9 90 61.1
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 5.1e-23 110.9 90 62.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 5.1e-23 110.9 90 62.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.1e-22 109.8 90 60.0
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 1.9e-22 109.0 90 61.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 1.9e-22 109.0 90 60.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 3.3e-22 108.2 90 61.1
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 3.3e-22 108.2 90 61.1
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 3.3e-22 108.2 90 60.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.6e-22 107.5 88 60.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 5.6e-22 107.5 90 61.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 5.6e-22 107.5 90 61.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 9.5e-22 106.7 90 58.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 9.5e-22 106.7 90 58.9
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 9.5e-22 106.7 90 60.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 1.2e-21 106.3 90 56.7
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 57.8
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 60.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 60.0
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 60.0
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 60.0
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 60.0
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 58.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 58.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 61.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 1.6e-21 105.9 90 56.7
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 2.8e-21 105.1 90 57.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 3.6e-21 104.8 87 57.5
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.6e-21 104.8 90 53.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 4.7e-21 104.4 90 57.8
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 4.7e-21 104.4 90 57.8
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 6.2e-21 104.0 90 58.9
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 8.1e-21 103.6 90 58.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.1e-20 103.2 90 56.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 1.4e-20 102.8 90 53.3
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 2.4e-20 102.1 82 62.2
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 3.1e-20 101.7 85 55.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 4.0e-20 101.3 90 56.7
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 8.9e-20 100.1 89 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.0e-19 99.0 90 54.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.6e-19 98.6 90 54.4
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.4e-19 98.2 90 52.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 4.4e-19 97.8 90 54.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 7.6e-19 97.1 82 58.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.2e-18 95.5 90 52.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 2.9e-18 95.1 78 57.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 1.9e-17 92.4 87 51.7
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 8.7e-15 83.6 86 53.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 6.2e-13 77.4 89 43.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 9.0e-12 73.6 60 58.3
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.3e-06 53.9 45 57.8


User provided reference genes

Program Settings