Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.2e-302 1042.3 515 100.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.9e-123 446.4 513 49.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.1e-119 434.5 511 48.1
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.3e-118 431.0 526 48.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 6.5e-115 418.7 507 46.5
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 6.5e-115 418.7 547 46.4
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.0e-112 411.4 507 46.2
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.7e-111 405.6 508 45.3
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 9.7e-111 404.8 513 45.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 8.2e-110 401.7 512 46.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.4e-109 401.0 513 45.2
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-109 400.6 512 45.5
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.2e-108 397.9 513 46.6
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.9e-107 393.3 513 46.0
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.9e-107 393.3 513 45.4
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.9e-106 390.6 517 45.3
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.1e-105 387.1 515 43.9
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.1e-105 387.1 513 44.6
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.1e-105 387.1 513 46.6
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.1e-105 385.6 513 44.6
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 6.1e-105 385.6 513 44.6
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.4e-104 384.4 512 45.5
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.8e-104 384.0 513 45.0
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.0e-104 383.3 513 44.4
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 3.0e-104 383.3 518 41.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 3.9e-104 382.9 511 44.8
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.1e-103 381.3 523 44.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.1e-103 381.3 516 45.0
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.6e-103 380.2 527 45.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 3.3e-103 379.8 512 44.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 3.3e-103 379.8 507 44.6
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 5.7e-103 379.0 511 44.6
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 5.7e-103 379.0 506 44.9
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.8e-102 376.7 518 45.9
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.8e-102 376.7 508 43.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 6.3e-102 375.6 510 45.1
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 8.2e-102 375.2 507 44.4
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.4e-101 374.4 509 44.6
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 3.1e-101 373.2 522 43.3
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-100 371.3 512 44.3
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.2e-99 367.1 526 42.4
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 2.2e-99 367.1 511 44.8
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 2.2e-99 367.1 518 43.4
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.5e-99 365.2 540 40.7
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.5e-98 363.6 552 41.8
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 3.2e-98 363.2 526 42.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 7.2e-98 362.1 583 40.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 9.4e-98 361.7 526 42.4
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 9.4e-98 361.7 584 39.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.2e-97 361.3 514 43.0
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 3.6e-97 359.8 511 44.2
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 6.1e-97 359.0 519 42.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 5.2e-96 355.9 521 42.6
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 6.8e-96 355.5 513 40.2
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 6.8e-96 355.5 521 43.2
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.0e-95 354.0 532 43.6
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.0e-95 354.0 519 43.0
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.4e-95 353.2 506 41.7
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.4e-95 353.2 526 41.8
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 4.4e-95 352.8 517 42.6
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.4e-95 352.8 525 43.0
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 9.7e-95 351.7 508 41.9
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.3e-94 351.3 541 42.5
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.7e-94 350.9 517 42.4
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.2e-94 350.5 515 42.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.8e-94 350.1 513 41.5
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 4.8e-94 349.4 513 41.3
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-93 348.2 531 42.9
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 4.1e-93 346.3 536 42.4
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 7.0e-93 345.5 512 43.8
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.7e-92 343.6 514 39.5
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.5e-92 343.2 515 40.8
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 5.9e-92 342.4 515 41.2
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 5.9e-92 342.4 520 41.3
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.9e-92 342.4 517 43.3
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 3.8e-91 339.7 522 43.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 5.0e-91 339.3 517 41.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-90 338.2 510 41.4
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.9e-90 337.4 514 41.1
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 9.4e-90 335.1 511 41.1
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.2e-89 334.7 517 40.4
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.1e-89 334.0 584 38.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.8e-88 330.9 333 52.3
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 3.7e-86 323.2 339 49.9
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.0e-83 315.1 510 40.0
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.3e-83 314.7 512 38.3
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.1e-82 311.6 333 46.2
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.1e-81 307.4 511 40.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.0e-80 305.1 317 53.6
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 3.0e-80 303.5 520 37.3
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.4e-79 299.7 352 46.9
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 5.7e-79 299.3 317 49.8
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.3e-78 298.1 323 48.3
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.7e-78 297.7 582 37.1
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 8.3e-78 295.4 353 46.5
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.4e-77 293.9 322 48.8
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 2.4e-77 293.9 320 48.4
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.6e-74 282.7 319 48.3
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 7.3e-74 282.3 318 45.3
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.4e-72 278.1 331 48.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-72 277.7 321 49.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 3.1e-72 276.9 194 68.0
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 5.2e-72 276.2 359 46.0
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.4e-71 273.1 200 66.0
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 9.8e-71 271.9 317 45.1
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 4.9e-70 269.6 359 43.7
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 9.2e-69 265.4 346 43.1
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.0e-68 262.7 327 42.5
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 6.6e-67 259.2 329 45.3
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.2e-65 255.0 174 67.8
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.6e-65 254.6 319 43.3
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.2e-64 249.6 209 56.9
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 6.4e-62 242.7 192 56.8
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.9e-54 217.2 326 40.5
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.6e-51 205.7 327 39.4
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-48 198.7 200 53.5
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 5.2e-48 196.4 137 66.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.6e-47 194.1 334 37.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 4.9e-46 189.9 178 51.1
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 3.5e-44 183.7 138 62.3
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 6.0e-44 183.0 136 59.6
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.3e-43 181.0 200 50.0
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.1e-35 153.3 276 35.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-33 148.7 104 61.5
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.2e-30 137.9 190 40.5
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.9e-30 136.7 333 31.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 3.2e-29 134.0 229 40.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 4.2e-29 133.7 229 41.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.9e-27 127.1 334 29.9
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 6.7e-27 126.3 95 60.0
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 1.9e-26 124.8 231 39.4
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.3e-26 124.0 119 48.7
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.5e-21 107.8 204 35.8
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 5.5e-21 106.7 254 35.4
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.7e-20 104.4 75 62.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.8e-19 101.7 101 51.5
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.7e-19 99.8 198 35.4
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 1.6e-17 95.1 151 42.4
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.4e-15 87.4 169 36.1
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-13 82.4 132 38.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.5e-13 80.1 206 30.1
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.3e-09 68.9 114 37.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.7e-09 67.4 104 37.5
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-08 65.1 42 61.9
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.9e-07 60.1 69 42.0
Os07g0510350 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.5e-06 56.6 38 60.5


User provided reference genes

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