Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02116 Sapria himalayana HOM05D000030 ORTHO05D000009 5.6e-71 270.8 132 100.0
Manes.01G128600 Manihot esculenta HOM05D000030 ORTHO05D000009 2.8e-22 109.0 157 43.9
Atru.chr10.1789 Acer truncatum HOM05D000030 ORTHO05D000009 1.3e-19 100.1 157 41.4
Thecc.01G160100 Theobroma cacao HOM05D000030 ORTHO05D000009 3.8e-19 98.6 156 41.0
Gohir.A05G377850 Gossypium hirsutum HOM05D000030 ORTHO05D000009 1.4e-18 96.7 157 41.4
CiPaw.03G188400 Carya illinoinensis HOM05D000030 ORTHO05D000009 3.2e-18 95.5 157 40.1
Gohir.D04G037850 Gossypium hirsutum HOM05D000030 ORTHO05D000009 4.2e-18 95.1 157 41.4
Gorai.012G042700 Gossypium raimondii HOM05D000030 ORTHO05D000009 4.2e-18 95.1 157 41.4
Duzib147G0286 Durio zibethinus HOM05D000030 ORTHO05D000009 9.4e-18 94.0 156 39.1
Duzib187G0027 Durio zibethinus HOM05D000030 ORTHO05D000009 9.4e-18 94.0 156 39.7
Dinv12705 Davidia involucrata HOM05D000030 ORTHO05D000009 1.2e-17 93.6 157 39.5
TWI59G0458 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 2.1e-17 92.8 157 37.6
TAR626G0672 Trochodendron aralioides HOM05D000030 ORTHO05D000009 4.7e-17 91.7 157 36.3
COL.COLO4_33723 Corchorus olitorius HOM05D000030 ORTHO05D000009 6.1e-17 91.3 156 37.8
Nn6g34411 Nelumbo nucifera HOM05D000030 ORTHO05D000009 6.1e-17 91.3 157 36.3
CSS0000026 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 1.8e-16 89.7 157 39.5
RcHm_v2.0_Chr2g0151021 Rosa chinensis HOM05D000030 ORTHO05D000009 1.8e-16 89.7 157 37.6
MD17G1141400 Malus domestica HOM05D000030 ORTHO05D000009 2.3e-16 89.4 157 37.6
QL08p043779 Quercus lobata HOM05D000030 ORTHO05D000009 3.9e-16 88.6 157 38.2
Nn3g20984 Nelumbo nucifera HOM05D000030 ORTHO05D000009 8.8e-16 87.4 157 35.0
Sed0021065 Sechium edule HOM05D000030 ORTHO05D000009 1.1e-15 87.0 159 39.0
Eucgr.K01194 Eucalyptus grandis HOM05D000030 ORTHO05D000009 2.0e-15 86.3 156 36.5
Glyma.08G310300 Glycine max HOM05D000030 ORTHO05D000009 4.4e-15 85.1 157 36.9
CANSAT78G1819 Cannabis sativa HOM05D000030 ORTHO05D000009 5.7e-15 84.7 157 36.9
Glyma.18G105600 Glycine max HOM05D000030 ORTHO05D000009 5.7e-15 84.7 157 36.3
THA.LOC104822078 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 5.7e-15 84.7 158 34.8
PGR142G4267 Punica granatum HOM05D000030 ORTHO05D000009 7.4e-15 84.3 156 34.0
CARHR063050 Cardamine hirsuta HOM05D000030 ORTHO05D000009 9.7e-15 84.0 160 34.4
Lj6g0001535 Lotus japonicus HOM05D000030 ORTHO05D000009 9.7e-15 84.0 157 36.3
GSVIVG01014094001 Vitis vinifera HOM05D000030 ORTHO05D000009 9.7e-15 84.0 157 32.5
MELO3C031104.2 Cucumis melo HOM05D000030 ORTHO05D000009 1.3e-14 83.6 159 37.7
CsaV3_6G037990 Cucumis sativus L. HOM05D000030 ORTHO05D000009 1.3e-14 83.6 159 37.7
Psat5g187960 Pisum sativum HOM05D000030 ORTHO05D000009 1.3e-14 83.6 155 37.4
Rhsim06G0120900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-14 83.6 157 36.3
Oeu041608.1 Olea europaea HOM05D000030 ORTHO05D000009 1.7e-14 83.2 157 34.4
Oeu041609.1 Olea europaea HOM05D000030 ORTHO05D000009 1.7e-14 83.2 157 34.4
FvH4_6g37871 Fragaria vesca HOM05D000030 ORTHO05D000009 2.8e-14 82.4 157 36.3
Hma1.2p1_0050F.1_g028760 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.8e-14 81.6 157 33.8
Prupe.3G170500 Prunus persica HOM05D000030 ORTHO05D000009 4.8e-14 81.6 157 36.3
ClCG09G022320 Citrullus lanatus HOM05D000030 ORTHO05D000009 6.3e-14 81.3 159 36.5
MD09G1155300 Malus domestica HOM05D000030 ORTHO05D000009 6.3e-14 81.3 157 35.7
AUR62019656 Chenopodium quinoa HOM05D000030 ORTHO05D000009 8.2e-14 80.9 157 33.8
Migut.L01144 Erythranthe guttata HOM05D000030 ORTHO05D000009 8.2e-14 80.9 157 33.1
AUR62013958 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.1e-13 80.5 157 33.8
Sp5g25070 Schrenkiella parvula HOM05D000030 ORTHO05D000009 1.1e-13 80.5 159 33.3
AL2G29190 Arabidopsis lyrata HOM05D000030 ORTHO05D000009 1.4e-13 80.1 159 33.3
Solyc10g007810.3 Solanum lycopersicum HOM05D000030 ORTHO05D000009 1.4e-13 80.1 157 35.0
Sopen10g003710 Solanum pennellii HOM05D000030 ORTHO05D000009 1.4e-13 80.1 157 35.0
PGSC0003DMG400021240 Solanum tuberosum HOM05D000030 ORTHO05D000009 1.4e-13 80.1 157 35.0
CSS0012840 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 1.8e-13 79.7 157 35.0
Potri.001G383800 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.8e-13 79.7 157 31.8
CSS0043238 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.4e-13 79.3 157 35.0
Lalb_Chr10g0106771 Lupinus albus HOM05D000030 ORTHO05D000009 2.4e-13 79.3 156 34.0
Potri.011G104000 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.4e-13 79.3 157 31.8
Solyc10g007470.4 Solanum lycopersicum HOM05D000030 ORTHO05D000009 2.4e-13 79.3 157 32.5
Sopen10g003410 Solanum pennellii HOM05D000030 ORTHO05D000009 2.4e-13 79.3 157 32.5
PGSC0003DMG400021296 Solanum tuberosum HOM05D000030 ORTHO05D000009 2.4e-13 79.3 157 32.5
TPR.G16773 Trifolium pratense HOM05D000030 ORTHO05D000009 9.1e-13 77.4 155 34.8
Aqoxy1G01896 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 1.2e-12 77.0 155 32.9
BolC6t39454H Brassica oleracea HOM05D000030 ORTHO05D000009 1.6e-12 76.6 161 32.3
Sabra16G0252800 Salix brachista HOM05D000030 ORTHO05D000009 1.6e-12 76.6 157 30.6
A07p36400 Brassica napus HOM05D000030 ORTHO05D000009 2.0e-12 76.3 162 32.7
BraA07t31212Z Brassica rapa HOM05D000030 ORTHO05D000009 2.0e-12 76.3 162 32.7
Cc05_g09240 Coffea canephora HOM05D000030 ORTHO05D000009 2.0e-12 76.3 157 33.1
Lalb_Chr04g0248691 Lupinus albus HOM05D000030 ORTHO05D000009 2.0e-12 76.3 156 33.3
Thhalv10018229m.g Eutrema salsugineum HOM05D000030 ORTHO05D000009 2.6e-12 75.9 159 32.7
Lj3C1010G18 Lonicera japonica HOM05D000030 ORTHO05D000009 2.6e-12 75.9 161 34.2
Hund10414 Selenicereus undatus HOM05D000030 ORTHO05D000009 2.6e-12 75.9 157 30.6
C06p43820 Brassica napus HOM05D000030 ORTHO05D000009 3.5e-12 75.5 161 31.7
Ca_14610_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 3.5e-12 75.5 155 34.8
HanXRQChr17g0541281 Helianthus annuus HOM05D000030 ORTHO05D000009 3.5e-12 75.5 156 31.4
EL10Ac4g08420 Beta vulgaris HOM05D000030 ORTHO05D000009 4.5e-12 75.1 157 30.6
Ah.07g205350 Amaranthus hybridus HOM05D000030 ORTHO05D000009 5.9e-12 74.7 157 31.2
ECA246G4092 Erigeron canadensis HOM05D000030 ORTHO05D000009 1.3e-11 73.6 156 30.8
Atru.chr2.1965 Acer truncatum HOM05D000030 ORTHO05D000009 2.2e-11 72.8 157 33.1
Aqoxy4G00194 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 2.2e-11 72.8 156 32.1
MSTRG.6760 Avicennia marina HOM05D000030 ORTHO05D000009 2.2e-11 72.8 157 30.6
Atru.chr2.1941 Acer truncatum HOM05D000030 ORTHO05D000009 2.9e-11 72.4 157 33.1
Sabra11G0076800 Salix brachista HOM05D000030 ORTHO05D000009 3.8e-11 72.0 157 29.9
Sabra11G0081700 Salix brachista HOM05D000030 ORTHO05D000009 3.8e-11 72.0 157 29.9
CSS0008015 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 5.0e-11 71.6 157 29.9
CSS0048871 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 5.0e-11 71.6 157 29.9
Hma1.2p1_0325F.1_g125840 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.1e-10 70.5 158 31.0
Manes.03G079200 Manihot esculenta HOM05D000030 ORTHO05D000009 1.5e-10 70.1 157 29.9
Oeu010033.1 Olea europaea HOM05D000030 ORTHO05D000009 2.5e-10 69.3 157 31.2
CiPaw.12G110900 Carya illinoinensis HOM05D000030 ORTHO05D000009 5.5e-10 68.2 157 30.6
Rhsim06G0212000 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.5e-10 68.2 157 29.3
Oeu050678.1 Olea europaea HOM05D000030 ORTHO05D000009 7.2e-10 67.8 157 29.9
TWI38G0584 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 1.6e-09 66.6 157 28.7
Cc05_g10690 Coffea canephora HOM05D000030 ORTHO05D000009 2.1e-09 66.2 157 29.3
ECA236G4465 Erigeron canadensis HOM05D000030 ORTHO05D000009 2.1e-09 66.2 157 28.0
FvH4_3g17721 Fragaria vesca HOM05D000030 ORTHO05D000009 2.1e-09 66.2 154 29.9
MD11G1270200 Malus domestica HOM05D000030 ORTHO05D000009 2.1e-09 66.2 154 30.5
QL08p024128 Quercus lobata HOM05D000030 ORTHO05D000009 3.6e-09 65.5 157 29.3
ClCG11G017200 Citrullus lanatus HOM05D000030 ORTHO05D000009 6.1e-09 64.7 154 29.9
Sed0011120 Sechium edule HOM05D000030 ORTHO05D000009 1.0e-08 63.9 154 29.9
Actinidia39419 Actinidia chinensis HOM05D000030 ORTHO05D000009 1.4e-08 63.5 108 33.3
RcHm_v2.0_Chr5g0029491 Rosa chinensis HOM05D000030 ORTHO05D000009 1.8e-08 63.2 154 28.6
HanXRQChr11g0331181 Helianthus annuus HOM05D000030 ORTHO05D000009 3.0e-08 62.4 157 26.1
TWI38G0598 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 3.0e-08 62.4 154 27.9
Thecc.07G134000 Theobroma cacao HOM05D000030 ORTHO05D000009 6.7e-08 61.2 157 28.7
C01p49650 Brassica napus HOM05D000030 ORTHO05D000009 8.8e-08 60.8 157 28.7
BolC1t04921H Brassica oleracea HOM05D000030 ORTHO05D000009 8.8e-08 60.8 157 28.7
BraA01t03950Z Brassica rapa HOM05D000030 ORTHO05D000009 1.2e-07 60.5 157 28.7
MELO3C032351.2 Cucumis melo HOM05D000030 ORTHO05D000009 1.2e-07 60.5 154 27.9
Sp3g13020 Schrenkiella parvula HOM05D000030 ORTHO05D000009 1.5e-07 60.1 157 27.4
A01p39030 Brassica napus HOM05D000030 ORTHO05D000009 2.0e-07 59.7 157 28.0
CSS0042283 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.6e-07 59.3 157 28.0
MSTRG.12859 Avicennia marina HOM05D000030 ORTHO05D000009 3.3e-07 58.9 157 25.5
CSS0014032 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 3.3e-07 58.9 157 28.0
CARHR089740 Cardamine hirsuta HOM05D000030 ORTHO05D000009 3.3e-07 58.9 157 27.4
CsaV3_4G032860 Cucumis sativus L. HOM05D000030 ORTHO05D000009 4.4e-07 58.5 154 27.9
Thhalv10020233m.g Eutrema salsugineum HOM05D000030 ORTHO05D000009 5.7e-07 58.2 157 27.4
Migut.H02025 Erythranthe guttata HOM05D000030 ORTHO05D000009 7.5e-07 57.8 157 27.4
Lalb_Chr25g0285641 Lupinus albus HOM05D000030 ORTHO05D000009 9.7e-07 57.4 157 26.8
CANSAT56G0339 Cannabis sativa HOM05D000030 ORTHO05D000009 1.3e-06 57.0 154 26.0
THA.LOC104810425 Tarenaya hassleriana HOM05D000030 ORTHO05D000009 1.3e-06 57.0 154 26.0
CiPaw.11G156100 Carya illinoinensis HOM05D000030 ORTHO05D000009 2.2e-06 56.2 157 26.8
Aa31LG8G2010 Aethionema arabicum HOM05D000030 ORTHO05D000009 3.7e-06 55.5 157 27.4
Glyma.15G209800 Glycine max HOM05D000030 ORTHO05D000009 3.7e-06 55.5 157 26.1
Duzib213G0128 Durio zibethinus HOM05D000030 ORTHO05D000009 4.8e-06 55.1 157 25.5
Gohir.D11G302903 Gossypium hirsutum HOM05D000030 ORTHO05D000009 4.8e-06 55.1 157 24.8
Prupe.4G156200 Prunus persica HOM05D000030 ORTHO05D000009 4.8e-06 55.1 151 27.8
SHI42612 Sapria himalayana HOM05D000035 ORTHO05D000009 4.8e-06 55.1 127 26.0
Gohir.A11G289741 Gossypium hirsutum HOM05D000030 ORTHO05D000009 6.3e-06 54.7 157 24.8
Oeu022691.2 Olea europaea HOM05D000030 ORTHO05D010120 8.2e-06 54.3 151 21.9


User provided reference genes

Program Settings