Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI02109 Sapria himalayana HOM05D001660 ORTHO05D003277 4.1e-46 187.6 87 100.0
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 5.6e-11 70.9 77 46.8
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 1.6e-10 69.3 75 44.0
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 2.1e-10 68.9 77 45.5
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 6.2e-10 67.4 78 44.9
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.8e-09 65.9 76 40.8
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 1.8e-09 65.9 76 40.8
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 1.8e-09 65.9 77 41.6
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 2.4e-09 65.5 77 41.6
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 5.3e-09 64.3 77 39.0
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 6.9e-09 63.9 76 42.1
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 9.0e-09 63.5 77 40.3
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 9.0e-09 63.5 77 41.6
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 9.0e-09 63.5 87 41.4
Sed0008639 Sechium edule HOM05D001660 ORTHO05D003277 1.2e-08 63.2 76 38.2
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 1.5e-08 62.8 77 40.3
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 1.5e-08 62.8 77 39.0
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 1.5e-08 62.8 74 43.2
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 1.5e-08 62.8 87 42.5
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 2.6e-08 62.0 75 41.3
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 2.6e-08 62.0 77 40.3
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 2.6e-08 62.0 77 40.3
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 2.6e-08 62.0 75 41.3
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 3.4e-08 61.6 75 41.3
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 3.4e-08 61.6 75 41.3
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 5.8e-08 60.8 77 36.4
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 5.8e-08 60.8 75 40.0
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 7.6e-08 60.5 77 39.0
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 7.6e-08 60.5 77 37.7
Dinv40485 Davidia involucrata HOM05D001660 ORTHO05D003277 9.9e-08 60.1 85 36.5
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 9.9e-08 60.1 82 41.5
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 9.9e-08 60.1 77 40.3
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 9.9e-08 60.1 87 37.9
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 9.9e-08 60.1 74 41.9
arahy.Tifrunner.gnm1.ann1.PY7LAP Arachis hypogaea HOM05D001660 ORTHO05D003277 1.3e-07 59.7 80 40.0
QL08p041569 Quercus lobata HOM05D001660 ORTHO05D003277 1.3e-07 59.7 83 34.9
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 1.7e-07 59.3 77 41.6
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 1.7e-07 59.3 77 40.3
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.7e-07 59.3 77 40.3
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 2.2e-07 58.9 77 41.6
arahy.Tifrunner.gnm1.ann1.KZ47MP Arachis hypogaea HOM05D001660 ORTHO05D003277 2.2e-07 58.9 80 40.0
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 2.2e-07 58.9 75 37.3
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.2e-07 58.9 87 35.6
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 2.2e-07 58.9 77 39.0
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 2.2e-07 58.9 75 40.0
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 2.2e-07 58.9 77 37.7
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 3.8e-07 58.2 77 37.7
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 3.8e-07 58.2 87 35.6
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 3.8e-07 58.2 87 35.6
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.8e-07 58.2 75 41.3
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.8e-07 58.2 75 41.3
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 4.9e-07 57.8 77 37.7
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 4.9e-07 57.8 74 40.5
Dinv08795 Davidia involucrata HOM05D001660 ORTHO05D003277 4.9e-07 57.8 75 36.0
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 4.9e-07 57.8 87 35.6
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 6.4e-07 57.4 74 40.5
Glyma.13G291000 Glycine max HOM05D001660 ORTHO05D003277 6.4e-07 57.4 80 36.2
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 6.4e-07 57.4 75 38.7
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 6.4e-07 57.4 77 37.7
ClCG07G002810 Citrullus lanatus HOM05D001660 ORTHO05D003277 8.4e-07 57.0 76 38.2
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 8.4e-07 57.0 79 40.5
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 8.4e-07 57.0 77 36.4
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 1.1e-06 56.6 75 38.7
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 1.1e-06 56.6 87 35.6
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 1.1e-06 56.6 82 39.0
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 1.1e-06 56.6 82 39.0
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 1.1e-06 56.6 82 39.0
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 1.1e-06 56.6 81 38.3
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 1.1e-06 56.6 75 37.3
Oeu018756.1 Olea europaea HOM05D001660 ORTHO05D003277 1.4e-06 56.2 82 34.1
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 1.9e-06 55.8 77 37.7
EL10Ac9g20924 Beta vulgaris HOM05D001660 ORTHO05D003277 1.9e-06 55.8 77 39.0
Glyma.12G210300 Glycine max HOM05D001660 ORTHO05D003277 1.9e-06 55.8 80 36.2
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 1.9e-06 55.8 77 37.7
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 1.9e-06 55.8 78 38.5
TAR627G0958 Trochodendron aralioides HOM05D001660 ORTHO05D003277 1.9e-06 55.8 71 40.8
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.4e-06 55.5 75 37.3
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 2.4e-06 55.5 75 37.3
Ca_01456_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 3.2e-06 55.1 78 37.2
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 3.2e-06 55.1 77 37.7
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 3.2e-06 55.1 77 36.4
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 4.2e-06 54.7 82 37.8
Cc05_g08290 Coffea canephora HOM05D001660 ORTHO05D003277 5.4e-06 54.3 77 32.5
MELO3C018727.2 Cucumis melo HOM05D001660 ORTHO05D003277 5.4e-06 54.3 76 38.2
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 9.3e-06 53.5 74 36.5
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 9.3e-06 53.5 74 36.5
CsaV3_7G005640 Cucumis sativus L. HOM05D001660 ORTHO05D003277 9.3e-06 53.5 76 36.8
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 9.3e-06 53.5 78 33.3
RcHm_v2.0_Chr5g0006501 Rosa chinensis HOM05D001660 ORTHO05D003277 9.3e-06 53.5 81 37.0


User provided reference genes

Program Settings