Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.3e-156 555.4 267 100.0
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 7.9e-48 194.9 162 57.4
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.0e-47 193.0 152 60.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 3.0e-47 193.0 153 60.1
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.0e-47 193.0 149 61.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.9e-47 192.6 174 56.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.9e-47 192.6 153 59.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 8.7e-47 191.4 153 58.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.1e-46 191.0 175 56.6
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.1e-46 191.0 160 57.5
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-46 190.7 169 58.6
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-46 190.7 169 58.6
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 4.3e-46 189.1 148 62.2
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 4.3e-46 189.1 153 58.2
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 4.3e-46 189.1 153 58.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 5.7e-46 188.7 150 59.3
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 5.7e-46 188.7 162 58.0
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 5.7e-46 188.7 162 56.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 5.7e-46 188.7 152 58.6
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 7.4e-46 188.3 152 57.9
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.4e-46 188.3 161 57.1
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.4e-46 188.3 161 57.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 7.4e-46 188.3 161 57.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 9.7e-46 188.0 162 57.4
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 9.7e-46 188.0 152 58.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-45 187.6 153 57.5
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.6e-45 187.2 175 54.3
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.2e-45 186.8 165 55.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.2e-45 186.8 165 55.2
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 2.2e-45 186.8 152 57.9
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 2.8e-45 186.4 150 59.3
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.8e-45 186.4 152 58.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.8e-45 186.4 156 59.0
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 3.7e-45 186.0 158 58.9
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 4.8e-45 185.7 148 60.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 4.8e-45 185.7 171 52.6
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 6.3e-45 185.3 151 57.6
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 6.3e-45 185.3 153 58.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 6.3e-45 185.3 153 58.8
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 6.3e-45 185.3 152 57.9
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.3e-45 185.3 146 59.6
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 6.3e-45 185.3 156 59.0
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.2e-45 184.9 147 60.5
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.1e-44 184.5 152 59.2
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.1e-44 184.5 153 58.8
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.1e-44 184.5 153 58.8
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.4e-44 184.1 149 59.1
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.8e-44 183.7 162 56.2
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.4e-44 183.3 147 61.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.1e-44 183.0 171 52.6
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 3.1e-44 183.0 152 57.9
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 6.9e-44 181.8 148 58.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 6.9e-44 181.8 148 58.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.2e-43 181.0 160 54.4
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.2e-43 181.0 178 52.2
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.5e-43 180.6 151 56.3
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.0e-43 180.3 151 57.6
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 2.6e-43 179.9 153 54.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 3.4e-43 179.5 148 56.8
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.4e-43 179.5 148 59.5
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.4e-43 179.5 147 58.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-43 179.1 173 52.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.0e-42 177.9 153 55.6
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.3e-42 177.6 163 53.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.2e-42 176.8 146 59.6
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-42 176.8 152 55.9
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 2.9e-42 176.4 149 55.7
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.1e-41 174.5 137 60.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.4e-41 174.1 151 57.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.4e-41 174.1 153 56.9
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 2.5e-41 173.3 152 52.0
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 4.2e-41 172.6 160 53.8
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 4.2e-41 172.6 150 58.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.2e-41 172.6 152 54.6
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.2e-40 171.0 164 53.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.2e-40 171.0 151 55.0
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.6e-40 170.6 153 54.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.1e-40 170.2 164 53.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.1e-40 170.2 152 57.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.1e-40 168.7 175 49.1
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.4e-39 167.5 153 52.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.5e-38 164.1 164 50.6
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-38 162.9 155 56.8
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-38 162.9 155 56.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.3e-38 162.9 155 56.8
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.3e-38 162.9 155 56.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 7.4e-38 161.8 181 48.1
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 7.4e-38 161.8 148 55.4
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 7.4e-38 161.8 161 52.2
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-36 157.5 199 45.7
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.1e-36 156.0 152 50.7
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 6.9e-36 155.2 153 49.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 9.1e-36 154.8 132 57.6
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.5e-35 154.1 144 52.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.4e-35 152.9 153 49.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-35 152.5 165 47.9
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.6e-32 142.9 175 45.1
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.4e-31 141.0 164 45.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.3e-30 136.3 116 56.9
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.3e-30 136.3 152 46.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 8.2e-29 131.7 153 44.4
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.1e-28 129.8 156 44.9
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.8e-23 114.0 173 39.9
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 8.8e-23 111.7 152 41.4
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.7e-21 106.3 103 52.4
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 8.2e-21 105.1 73 64.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 8.2e-21 105.1 130 46.2
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.6e-19 100.9 98 50.0
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 7.7e-19 98.6 94 53.2
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.9e-18 96.7 83 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 6.5e-18 95.5 94 50.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.7e-16 89.4 73 63.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.5e-14 84.3 76 51.3
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 4.1e-12 76.3 61 62.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-11 74.7 57 61.4
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.7e-10 70.9 154 33.1
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-07 60.8 44 59.1
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 5.2e-07 59.3 39 64.1
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 5.2e-07 59.3 39 64.1
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 7.5e-06 55.5 37 70.3


User provided reference genes

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